BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF09RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1188 1380 0.0
>3x_Contig1188
Length = 4443
Score = 1380 bits (696), Expect = 0.0
Identities = 736/747 (98%), Gaps = 2/747 (0%)
Strand = Plus / Plus
Query: 48 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3672 tgcgaaggattttcagcgttaaacaaaacgataaaaaggaatacgtgtgtccaattggca 3731
Query: 108 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3732 aatttctcactgtaactatcaatccagctgtcttacagtagagaagcaatcaataatgtg 3791
Query: 168 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3792 ttctaagttccaataaaaagtaagaatcattaactgaaaacagacacttcttgtttgttt 3851
Query: 228 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3852 taaaagggaaactatagctttgcaaatgtagtgaagaaaagactatcaaatgaatgatgt 3911
Query: 288 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3912 atatttgcttttagtaatttgttgctgctctcttattaaacgttatatgaccaaaagtgt 3971
Query: 348 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3972 agtgaatctgagcgtcaaataagggaacttgatgattaaaaaagaagcaaagaaacagcg 4031
Query: 408 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4032 gcaattataatagcttgtatcaattattcctgtatgtaacacacttgctgctacaaccgc 4091
Query: 468 ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4092 ttaggactcgattgtgctgatagctctctggtgtgtgtgtgtgtatcttcctgacacctt 4151
Query: 528 cggtaagtatatcattctntaaggggtggttctgtgcattctttccttaaatctgagttt 587
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 4152 cggtaagtatatcattctttaaggggtggttctgtgcattctttccttaaatctgagttt 4211
Query: 588 tccctttattttattttttattttttttggatgctgcagaaggactacgtcaaattcatt 647
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 4212 tccctttattttattttttattttttttgaatgctgcagaaggactacgtcaaattcatt 4271
Query: 648 ataattatcaataaggttcctatattcatagctttcacaataaaagagagtgtgtatatg 707
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4272 ataattatcaataaggttcctatatccatagctttcacaataaaagagagtgtgtatatg 4331
Query: 708 tatgtatgcatggactaggtttaagat-tatatatatatatatatatatttaggacaatt 766
||||||||||| |||||| | || || ||||||||||||||||||||||||||||||||
Sbjct: 4332 tatgtatgcattgactagtataaatatatatatatatatatatatatatttaggacaatt 4391
Query: 767 cgggaggttcgaagtctattcgctgtt 793
|| || |||||||||||||||||||||
Sbjct: 4392 cgtga-gttcgaagtctattcgctgtt 4417
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,625
Number of Sequences: 1807
Number of extensions: 14625
Number of successful extensions: 2384
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)