BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF10FM1.SCF screened BAC_end
(885 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig991 1330 0.0
3x_Contig1391 258 2e-68
3x_Contig712 246 6e-65
>3x_Contig991
Length = 2941
Score = 1330 bits (671), Expect = 0.0
Identities = 752/771 (97%), Gaps = 6/771 (0%)
Strand = Plus / Plus
Query: 86 tacaaaaaattaatgttaataaaatgaaaaacttttgataattcaaatgaatttgagaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956 tacaaaaaattaatgttaataaaatgaaaaacttttgataattcaaatgaatttgagaaa 1015
Query: 146 ttaagatttttcagatctaaattagcgaaagctaagatgtgtagttcttaaaagtaatgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 ttaagatttttcagatctaaattagcgaaagctaagatgtgtagttcttaaaagtaatgg 1075
Query: 206 atgaccattatttttgtgtaaattgtcaaaatttacatcttcatttttataaaaattgaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 atgaccattatttttgtgtaaattgtcaaaatttacatcttcatttttataaaaattgaa 1135
Query: 266 tatatatttttcattttcaaaatctaaacgttgaaacaccttttgttttttgctttatcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1136 tatatatttttcattttcaaaatctaaacgttgaaacaccttttgttttttgctttatcc 1195
Query: 326 aacatgtaattataaaactcaatactacccgaagcgtaagctatcctcattaaatctata 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 aacatgtaattataaaactcaatactacccgaagcgtaagctatcctcattaaatctata 1255
Query: 386 tctgcggtaaacatatcaggatctctggaagcatattcattatagcataatttactataa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tctgcggtaaacatatcaggatctctggaagcatattcattatagcataatttactataa 1315
Query: 446 tagcatatctttgatctggaaagtctataagtaatttttgaacaatgtatctatttaaag 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 tagcatatctttgatctggaaagtctataagtaatttttgaacaatgtatctatttaaag 1375
Query: 506 ttttataagtatagaaataaaaaggtctataaagagatacaaaatgtggatcataaatat 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 ttttataagtatagaaataaaaaggtctataaagagatacaaaatgtggatcataaatat 1435
Query: 566 cgtttactaataaatttgctactgctttcctacataactcatcgggatattttttatgat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1436 cgtttactaataaatttgctactgctttcctacataactcatcgggatattttttatgat 1495
Query: 626 gtttaagtacataagctgaatttaagaaatt-aattcaacagggattgtatttatttata 684
||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1496 gtttaagtacataagctgaatttaagaaattaaattcaacaggatttgtatttatttata 1555
Query: 685 tctaaatatggtttattagaaagcatgttatagtacacacttttattctattagaacac- 743
|||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||
Sbjct: 1556 tctaaatatggtttataagaaagcatgttatagtacacactttta-tctatagaaacaca 1614
Query: 744 atccattggaccaaatactat-ttttcactataatcaatttatgtatgttaactatcatc 802
|||||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||||
Sbjct: 1615 atccataggaccaaatactatattatcactataatcaatatatgtatgtaaactatcatc 1674
Query: 803 tataattctttctaaa-tcatctgttttctag-aaaaatgtacatgaaaaa 851
||||||| ||||||| ||||||||||||||| |||| |||||||||||||
Sbjct: 1675 tataatttcttctaaattcatctgttttctagtaaaattgtacatgaaaaa 1725
>3x_Contig1391
Length = 4978
Score = 258 bits (130), Expect = 2e-68
Identities = 194/214 (90%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 86 tacaaaaaattaatgttaataaaatgaaaaacttttgataattcaaatgaatttgagaaa 145
|||||||||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct: 4728 tacaaaaaattaatattaataaatctaaaaacttt-gataatttaaatgaatttgagaaa 4786
Query: 146 ttaagatttttcagatctaaattagcgaaagctaagatgtgtagttcttaaaagtaatgg 205
|||||||||||||||||||||||| ||||| |||||||||| | |||||||||||||||
Sbjct: 4787 ataagatttttcagatctaaattagggaaagttaagatgtgtggctcttaaaagtaatgg 4846
Query: 206 atgaccattatttttgtgtaaattgtcaaaatttacatcttcatttttataaaaattgaa 265
|||||||||||| ||||||||||||||||||| ||||||||||| ||||| | | || ||
Sbjct: 4847 atgaccattattcttgtgtaaattgtcaaaatctacatcttcatatttatgatatttaaa 4906
Query: 266 tatatatttttcattttcaaaatctaaacgttga 299
|||||||||||| ||||||||||||||| |||||
Sbjct: 4907 tatatatttttcgttttcaaaatctaaatgttga 4940
>3x_Contig712
Length = 2076
Score = 246 bits (124), Expect = 6e-65
Identities = 335/398 (84%), Gaps = 13/398 (3%)
Strand = Plus / Minus
Query: 418 atattcattatagcat-aatttactataatagcatatctttgatctggaaagtctataag 476
|||||||| ||||||| ||||||||| || ||||||||||| |||||| || |||||
Sbjct: 1982 atattcataatagcattaatttactaatattgcatatctttggcgtggaaaatcgataag 1923
Query: 477 taatttttgaacaatgtatctatttaaagttttataagtatagaaataaaaaggtctata 536
|| ||||||||| || ||| ||||||||||||||||||| || ||||||||||| |||||
Sbjct: 1922 tagtttttgaaccatatatttatttaaagttttataagtgtaaaaataaaaaggcctata 1863
Query: 537 aagagatacaaaatgtggatcataaatatcgtttactaataaatttgctactgctttcct 596
|||||| ||||| | || |||||||||||| || |||||||||||| ||||||||| |
Sbjct: 1862 aagagacacaaagtttgaatcataaatatcattcactaataaatttaatactgctttttt 1803
Query: 597 acataactcatcgggatattttttatgatgtttaagtacataagctgaatttaagaaatt 656
||| || ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 1802 acacaaatcatctggatattctttatgatgtttaagtacataagctgaatttaaaaaatt 1743
Query: 657 -aattcaacagggattgtatt--tatttatatctaaatatggtttattagaaagcatgtt 713
|||||||| |||||| |||||||||||||||| ||||||| ||| | ||| ||
Sbjct: 1742 aaattcaac------tgtatttatatttatatctaaataaggtttataagagaccatatt 1689
Query: 714 atagtacacacttttattctattagaacac-atccattggaccaaatactat-ttttcac 771
|||||||||||||||| |||| ||||| |||||| ||||||||| || | |||| ||
Sbjct: 1688 atagtacacactttta-tctacagaaacacaatccataggaccaaattctgtattttgac 1630
Query: 772 tataatcaatttatgtatgttaactatcatctataatt 809
||||||| || ||||||| | | ||||||||||||||
Sbjct: 1629 tataatctatatatgtatataacatatcatctataatt 1592
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9471
Number of Sequences: 1807
Number of extensions: 9471
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 3
length of query: 885
length of database: 10,358,551
effective HSP length: 16
effective length of query: 869
effective length of database: 10,329,639
effective search space: 8976456291
effective search space used: 8976456291
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)