BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF10RM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1208 1312 0.0
>3x_Contig1208
Length = 5550
Score = 1312 bits (662), Expect = 0.0
Identities = 759/781 (97%), Gaps = 9/781 (1%)
Strand = Plus / Minus
Query: 49 tgatattctttgatgtctgatttgatcttttcaatcacggttgattgtaacgcatgcgtt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 tgatattctttgatgtctgatttgatcttttcaatcacggttgattgtaacgcatgcgtt 2012
Query: 109 atgttgactttttctggtatcaggccgctcatcgtactaatgggatctagatgaacaagc 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 atgttgactttttctggtatcaggccgctcatcgtactaatgggatctagatgaacaagc 1952
Query: 169 aaaataacttaaaatatagaaagcagctctcaaacttctttttgtttacagactattttt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 aaaataacttaaaatatagaaagcagctctcaaacttctttttgtttacagactattttt 1892
Query: 229 ggtttttagtctcttctttctcttatcgaacgtagcaagcagttacagactgtgttgttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 ggtttttagtctcttctttctcttatcgaacgtagcaagcagttacagactgtgttgttt 1832
Query: 289 gttctaaacaattaagtagtgatgaatgatgaggttgtgtagagtagcaccttagtttat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 gttctaaacaattaagtagtgatgaatgatgaggttgtgtagagtagcaccttagtttat 1772
Query: 349 gcaccaacgctttagtatcaaaattctgaaagtaaaagcggagtcctcaagtaaaagaag 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 gcaccaacgctttagtatcaaaattctgaaagtaaaagcggagtcctcaagtaaaagaag 1712
Query: 409 gtattaattatagttgaaataaagccagatataaacgagacttcaaaatttctctaagtg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 gtattaattatagttgaaataaagccagatataaacgagacttcaaaatttctctaagtg 1652
Query: 469 ttaaagagcctctgtccaagtccaattacagggctgtaaaaatacgcttcgctagagttc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1651 ttaaagagcctctgtccaagtccaattacagggctgtaaaaatacgcttcgctagagttc 1592
Query: 529 ccccaatcaatctcgaggaccgggcactctgatgttctaattcactttttctcttatatg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1591 ccccaatcaatctcgaggaccgggcactctgatgttctaattcactttttctcttatatg 1532
Query: 589 ttccgttaagtttctattctttccgtaattcagataattt-atttcaacaattaaacaat 647
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1531 ttccgttaagtttctattctttccgtaattcagataatttaatttcaacaattaaacaat 1472
Query: 648 tcagtatttcttttcagctggaaagtttcaaacgtaattcaccagtacaagaaagaagat 707
|||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| ||
Sbjct: 1471 tcagtatttc-tttcagctgaaaagtttcaaacgtaatcaaccagtacaagaaagagaat 1413
Query: 708 aactggggaaagggttttcgaaccgatcattgatggtcacttttct--aagaaaggaaga 765
|||| ||||||||||||||||||||||||||||| |||| ||||| ||||||| ||||
Sbjct: 1412 aact-gggaaagggttttcgaaccgatcattgat-gtcaactttctaaaagaaagaaaga 1355
Query: 766 aac-attttttagcctcgagagaatcttgtattgactagtaaaacaagcctgacagccac 824
||| || | | |||||||||||| ||||||| |||||||| |||| ||||||||||||||
Sbjct: 1354 aacaatctataagcctcgagagactcttgta-tgactagt-aaaccagcctgacagccac 1297
Query: 825 c 825
|
Sbjct: 1296 c 1296
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7899
Number of Sequences: 1807
Number of extensions: 7899
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)