BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF11FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig608 1322 0.0
>3x_Contig608
Length = 2255
Score = 1322 bits (667), Expect = 0.0
Identities = 739/755 (97%), Gaps = 6/755 (0%)
Strand = Plus / Minus
Query: 86 taggtgctattgttcaacctacaggttctttgaaggatgctaccaagactttgcaatcac 145
|||| ||||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||
Sbjct: 2217 taggggctattgttca-cctacgggt-ctttgaaggatgctaccaagactt-gcaatcac 2161
Query: 146 aattttacactcaatctgctgctttgccggctttgattcacattttgcaaaacagttcaa 205
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2160 aattttacactcaatctgctgctttgccggctttgattcacattt-gcaaaacagttcaa 2102
Query: 206 atgatggtat-atttttctagccggtgttgaagctagaaagcaagtttctaagcactggg 264
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 atgatggtatcaagcaactagccggtgttgaagctagaaagcaagtttctaagcactggg 2042
Query: 265 gttctcttgatgctgctactcaaacaagcgtaaagcaatccttgttgaactctgctttta 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 gttctcttgatgctgctactcaaacaagcgtaaagcaatccttgttgaactctgctttta 1982
Query: 325 acgaaggaaaagatgctgttcgccatgctaatgcccgtgtcattgcctccattggatccg 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1981 acgaaggaaaagatgctgttcgccatgctaatgcccgtgtcattgcctccattggatccg 1922
Query: 385 aagaattagacgagaagaaatggccagagttgattccaaaccttctacaagctgcttgtg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 aagaattagacgagaagaaatggccagagttgattccaaaccttctacaagctgcttgtg 1862
Query: 445 atagtaacccaaaaattagagaaactgctattttcattatcttgtcccttttggaatcct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 atagtaacccaaaaattagagaaactgctattttcattatcttgtcccttttggaatcct 1802
Query: 505 ttaatgctaacttggctttacacatcgatgatttcttgaacttgtttgctcaaactatta 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 ttaatgctaacttggctttacacatcgatgatttcttgaacttgtttgctcaaactatta 1742
Query: 565 acgattctgcatcattggagacaagatctttgtctgcgcaagccttgagttacgtctcct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 acgattctgcatcattggagacaagatctttgtctgcgcaagccttgagttacgtctcct 1682
Query: 625 ctttaatcgaagaagaaggtgaaatcaatccacaatatgccgctaagtttgcttctttga 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 ctttaatcgaagaagaaggtgaaatcaatccacaatatgccgctaagtttgcttctttga 1622
Query: 685 ttccttccgtcgtccaggttctggatgccaccatcagagaaggtgattcttactaacaca 744
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1621 ttccttccgtcgtccaggttctggatgccaccatcagagaaggtgatac-tactaacaca 1563
Query: 745 aagctaatcttcaactgtttaaatgactttttgttattggactctaaattaactggtaac 804
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1562 aagctaatcttcaactgtttaaatgactttttgttattggactctcaattaactggtaac 1503
Query: 805 acaattgctgatttggccaaattggctttacaaat 839
|||||||||||||||| ||||||||||||||||||
Sbjct: 1502 acaattgctgatttggtcaaattggctttacaaat 1468
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7392
Number of Sequences: 1807
Number of extensions: 7392
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)