BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF11RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1207 1273 0.0
>3x_Contig1207
Length = 6451
Score = 1273 bits (642), Expect = 0.0
Identities = 728/750 (97%), Gaps = 5/750 (0%)
Strand = Plus / Plus
Query: 96 cacgcttcacatatttctatattattttcagttttagtagaccaacattggcgttgaaat 155
||||||||| |||||||| |||| ||||||||||| || |||||||| ||||||||| ||
Sbjct: 208 cacgcttcaaatatttctctattcttttcagttttcgtcgaccaacaatggcgttgacat 267
Query: 156 tagtatttattatattattttacaagatagcccgttcttcaactggatagtggaagcaaa 215
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tagtctttattatattattttacaagatagcccgttcttcaactggatagtggaagcaaa 327
Query: 216 ggagacattagatgtattagtattattcttattgattgcgttggtactatttgtctatag 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggagacattagatgtattagtattattcttattgattgcgttggtactatttgtctatag 387
Query: 276 gaaatttatcggaattctcataacttttttctatagctttgaggtactcgttatgtttat 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaaatttatcggaattctcataacttttttctatagctttgaggtactcgttatgtttat 447
Query: 336 ggtactgcctgttcaaatataggtatttagcgttccaattgtccattattagatcaaaat 395
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggtactgcctgttcaaatataggtatttagcgttccaattgtccattattagatcaaaat 507
Query: 396 tcggattatgcgtccaaatcttgattaacgctggttttatatcattgtgttcgtttatcc 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tcggattatgcgtccaaatcttgattaacgctggttttatatcattgtgttcgtttatcc 567
Query: 456 attctgccaattttgtaacaaaaattttccaatgtagcagctgtgaatccatgtttaatt 515
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 attctgccaattttgtaacaaaaattttccaatgtagcagctgtgaatccatgtttaatt 627
Query: 516 tacctgattcttcgacgttgaagttggtgtacaaggaatccaatccatacaagggttccc 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tacctgattcttcgacgttgaagttggtgtacaaggaatccaatccatacaagggttccc 687
Query: 576 agtggaaaactttaatttttgggttcactttgaagctgttagggtcttcttggtactcag 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 agtggaaaactttaatttttgggttcactttgaagctgttagggtcttcttggtactcag 747
Query: 636 acagtattcttccagaccatccatattcttgattagataccatttcaaattgcgaatccg 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 acagtattcttccagaccatccatattcttgattagataccatttcaaattgcgaatccg 807
Query: 696 gaatgggttgtaat-ctactggcccagaaa-ttatgcaatccacgaaggttttacattgc 753
||||||| |||||| ||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 808 gaatggg-tgtaatcctactggcccagaaatttatgcaatccacgaaggtttcacattgc 866
Query: 754 ttggaaagatgaacattc-aatttcagacttttgggatgctgaacatcggcaaatttcac 812
|||| ||||||||||||| ||| ||||||| ||| |||||||| |||||||||||| ||
Sbjct: 867 ttgg-aagatgaacattcaaatatcagactcttgtgatgctgatcatcggcaaattcaac 925
Query: 813 ttggaaacctttcggttttgatgcccccgt 842
|||||||| ||||||||||||||| |||||
Sbjct: 926 ttggaaacatttcggttttgatgcacccgt 955
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7537
Number of Sequences: 1807
Number of extensions: 7537
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)