BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZF12RM1.SCF screened BAC_end
(955 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 569 e-162
>3x_Contig995
Length = 2553
Score = 569 bits (287), Expect = e-162
Identities = 383/410 (93%), Gaps = 4/410 (0%)
Strand = Plus / Minus
Query: 467 taaatccttggcttaagatgtactcatggaataattgtactcgttttccagatacaggga 526
||||||||| ||||| || |||||| ||||||||||||| ||||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 527 atctattgtagaattctcttgaatctgatttcaactccgaaatgaagcttgatttagtaa 586
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 587 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 647 tattgcgagcgaccatagtcataccattgaaaggctcgattactgatttgttattattgt 706
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 2185
Query: 707 ataagaagttcttttccataccagcagacaatccaaattgagactgtntgtgttcggcag 766
|||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 2184 ataagaagttcttttcgataccagcagacaatccaaattgagactgtttgtgttcgtcag 2125
Query: 767 attcaccgatgaaagggttgcttggataattccaagtaagtgtggttagcaataacctgc 826
||||||||||| |||||||||||| |||| |||||||||||||||||||| |||| ||||
Sbjct: 2124 attcaccgatg-aagggttgcttgaataagtccaagtaagtgtggttagc-ataaactgc 2067
Query: 827 cgtttttacagacgggttctttgggaaagggcaacccttaattttgctcc 876
|| |||||||||||| ||| |||||||| |||||| | ||||||||||||
Sbjct: 2066 cgcttttacagacggattc-ttgggaaatggcaacgc-taattttgctcc 2019
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6629
Number of Sequences: 1807
Number of extensions: 6629
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 955
length of database: 10,358,551
effective HSP length: 16
effective length of query: 939
effective length of database: 10,329,639
effective search space: 9699531021
effective search space used: 9699531021
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)