BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZG01FM1.SCF screened BAC_end
         (910 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1238                                                        1126   0.0  

>3x_Contig1238 
          Length = 5289

 Score = 1126 bits (568), Expect = 0.0
 Identities = 581/584 (99%), Gaps = 1/584 (0%)
 Strand = Plus / Minus

                                                                        
Query: 86   cggggttcaaatgtaagccaatctcatgagccattctaaaggctaaccccgattcatacc 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1475 cggggttcaaatgtaagccaatctcatgagccattctaaaggctaaccccgattcatacc 1416

                                                                        
Query: 146  atgctaatggattctcgccatttccaatatcatagaaggcaaggcataaaattgtttgga 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1415 atgctaatggattctcgccatttccaatatcatagaaggcaaggcataaaagtgtttgga 1356

                                                                        
Query: 206  tgatacccaatttataagatgatgaataactcgcagtagatccatctagctggaagattt 265
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1355 tgatacccaatttagaagatgatgaataactcgcagtagatccatctagctggaagattt 1296

                                                                        
Query: 266  tatttaatacttttgttttagccagtgtgtaatattcttgagatttcttgtacagttctt 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1295 tatttaatacttttgttttagccagtgtgtaatattcttgagatttcttgtacagttctt 1236

                                                                        
Query: 326  cgttcttatcggcaagcttacttcctaaagcagcaattgcaaacaccaattctttagaac 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1235 cgttcttatcggcaagcttacttcctaaagcagcaattgcaaacaccaattctttagaac 1176

                                                                        
Query: 386  agtagtatgcttttgtagaaggctcaccgaaaagggcgcttagaaaggtttctctatgaa 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1175 agtagtatgcttttgtagaaggctcaccgaaaagggcgcttagaaaggtttctctatgaa 1116

                                                                        
Query: 446  tgaaagtataatggccaggatataaccatttgaaaaacaacgataaagcaggtagtatca 505
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1115 tgaaagtataatggccaggatataaccatttgaaaaacaacgataaagcaggtagtatca 1056

                                                                        
Query: 506  ctggcgacctggacaatgttcggagattagaggtagtcatatctcgattgacatcgttgg 565
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1055 ctggcgacctggacaatgttcggagattagaggtagtcatatctcgattgacatcgttgg 996

                                                                        
Query: 566  aaaatatttttgtgatggctagagaatcgttagaatagatactggatgaaaccacttggt 625
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 995  aaaatatttttgtgatggctagagaatcgttagaatagatactggatgaaaccacttggt 936

                                                        
Query: 626  tattttttggtcaatgtactttgcatatttggtgatgaaggagt 669
            || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 935  ta-tttttggtcaatgtactttgcatatttggtgatgaaggagt 893


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6793
Number of Sequences: 1807
Number of extensions: 6793
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)