BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG03FM1.SCF screened BAC_end
(921 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1407 0.0
>3x_Contig1719
Length = 15804
Score = 1407 bits (710), Expect = 0.0
Identities = 798/818 (97%), Gaps = 7/818 (0%)
Strand = Plus / Minus
Query: 87 ttttggagctagttcaagagcgcaagtggggtaacatcatattgaagtaattattcgata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14236 ttttggagctagttcaagagcgcaagtggggtaacatcatattgaagtaattattcgata 14177
Query: 147 tccatactgtgttgttttttttccggtttggttgggtaaggaatttaccgcctacttact 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14176 tccatactgtgttgttttttttccggtttggttgggtaaggaatttaccgcctacttact 14117
Query: 207 accttgtcaatttgtcaactttgcatcaatatcactggtgcccctccttaacatcagatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14116 accttgtcaatttgtcaactttgcatcaatatcactggtgcccctccttaacatcagatg 14057
Query: 267 gatgtttgaatagaattttttttttttttggccaaaagaaaagttggctttagtttgtcg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14056 gatgtttgaatagaattttttttttttttggccaaaagaaaagttggctttagtttgtcg 13997
Query: 327 ttggttgtcattttccattataagaattttgaatatttgttataataactactttgtctt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13996 ttggttgtcattttccattataagaattttgaatatttgttataataactactttgtctt 13937
Query: 387 attttcttatacacgtgacgacgtaataactctttgggtcttgggcaaagagaactgtct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13936 attttcttatacacgtgacgacgtaataactctttgggtcttgggcaaagagaactgtct 13877
Query: 447 cagaggaacgtaactgttatctgcattggctaatccggagtacagtacgtagaatgcaca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13876 cagaggaacgtaactgttatctgcattggctaatccggagtacagtacgtagaatgcaca 13817
Query: 507 catagcgctgaacataccaaagtatcctcccgcttttgcgattggtacgctatccaaaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13816 catagcgctgaacataccaaagtatcctcccgcttttgcgattggtacgctatccaaaaa 13757
Query: 567 ctcagagcatgcaagcatgatgaacgtcatctccaagaaagtgaaacataggaataggcc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13756 ctcagagcatgcaagcatgatgaacgtcatctccaagaaagtgaaacataggaataggcc 13697
Query: 627 ccatgtcgatttcatagtacataaccagcacagtgttgttgaaaactgtccaacacgtta 686
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 13696 ccatgtcgatttcatagtacataaccagcacagtg-tggtgaaaactgtccaacacgtta 13638
Query: 687 ggtatagaccttacgcattcttcaacattgccgggtcgtcagagtaactcgatacgattt 746
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 13637 ggtatagacctaacgcattcttcaacattgccgggtcgtcagagtaactcgatacgatat 13578
Query: 747 tggattgatcagtcaatatcactgaattaacttaacacaaagccttcggtatgcccggag 806
|| ||||||||||||||||||||||| ||||||||| |||||| || |||||||| |||
Sbjct: 13577 tgaattgatcagtcaatatcactgaa-taacttaaccaaaagcc-tccgtatgccccgag 13520
Query: 807 cacattcttaccaattgtgtcacccaattgggaaacagaataaaccggcctatatatttc 866
|||| || |||||| |||||||||||| |||||||||||||||||||| |||| || |||
Sbjct: 13519 cacagtcataccaaatgtgtcacccaa-tgggaaacagaataaaccgg-ctat-taattc 13463
Query: 867 gatgatcccaccgttaaaagattgcagcggccagcact 904
||||||||||||| ||||||||||||||| ||||||||
Sbjct: 13462 gatgatcccaccg-taaaagattgcagcgcccagcact 13426
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,500
Number of Sequences: 1807
Number of extensions: 14500
Number of successful extensions: 395
Number of sequences better than 1.0e-20: 1
length of query: 921
length of database: 10,358,551
effective HSP length: 16
effective length of query: 905
effective length of database: 10,329,639
effective search space: 9348323295
effective search space used: 9348323295
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)