BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG03RM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1574 0.0
>3x_Contig1383
Length = 6139
Score = 1574 bits (794), Expect = 0.0
Identities = 847/860 (98%), Gaps = 4/860 (0%)
Strand = Plus / Minus
Query: 53 aaaatgtgaccacgagacaaattaggagataacttggagacgtaatggtataattcatca 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2176 aaaatgtgaccacgagacaaattaggagataacttggagacgtaatggtataattcatca 2117
Query: 113 catttttctttaacgacttccactgcatcactggtttctggtaattcaaccagagtatca 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2116 catttttctttaacgacttccactgcatcactggtttctggtaattcaaccagagtatca 2057
Query: 173 ccttcaccgcacacatacacttcatcctttcttgcatacatttctggcgagaaatacttg 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2056 ccttcaccgcacacatacacttcatcctttcttgcatacatttctggcgagaaatacttg 1997
Query: 233 ttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttccggtggatggt 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1996 ttggaagatatcttcaattcggtaaatatagcatatggcgaaacagttccggtggatggt 1937
Query: 293 ttgattgtgatggaatgtgctcttaaaccagagattggacaatccggcaatagtctagaa 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1936 ttgattgtgatggaatgtgctcttaaaccagagattggacaatccggcaatagtctagaa 1877
Query: 353 gtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaactggttcttgt 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1876 gtccaaggtcccatacatagaacaacctggtcaacgtccaaaaggtcaactggttcttgt 1817
Query: 413 aaacgttgttcttctggatcatcaactgttggaatgtacgatactcccgctgcggcacac 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1816 aaacgttgttcttctggatcatcaactgttggaatgtacgatactcccgctgcggcacac 1757
Query: 473 tgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactgccccagtctcc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1756 tgatcgttgaaatgcaactgtgacactttgcccaggattaaatccactgccccagtctcc 1697
Query: 533 attgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgagcagtggagtca 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 attgccttcaacagtagatagtgagtgaatttgaaaggatgtacttgagcagtggagtca 1637
Query: 593 gttccaccaagagatgaccaatctctcaccaaccgttttttgatccagttcanatcacta 652
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1636 gttccaccaagagatgaccaatctctcaccaaccgttttttgatccagttcaaatcacta 1577
Query: 653 ggtagacgtaatgggtctttagataatgcaatcgaggattttgtatccaactccgatgca 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 ggtagacgtaatgggtctttagataatgcaatcgaggattttgtatccaactccgatgca 1517
Query: 713 ggtgcctcgtnctcttcatcatcttctccgtaactatattcgtaatcttcgtcgtcttca 772
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 ggtgcctcgtcctcttcatcatcttctccgtaactatattcgtaatcttcgtcgtcttca 1457
Query: 773 gtggtgcccactctggaaacaggttcgttgttcaccactgcacattgcttttttgggatt 832
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 1456 gtggtgcccactctggaaacaggttcgttgttcaccactgcaca-tgctttttt-ggatt 1399
Query: 833 tctttttctgcgaaggctttgcttcttga-gtaatcttttcctcattactagcataactt 891
||||||||||||| |||||||| |||||| ||| ||||| | ||||||||||||||||||
Sbjct: 1398 tctttttctgcgatggctttgc-tcttgaggtagtctttccatcattactagcataactt 1340
Query: 892 ttgtcgtcatggccggcatt 911
| |||||||| |||| ||||
Sbjct: 1339 tcgtcgtcatcgccgtcatt 1320
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6160
Number of Sequences: 1807
Number of extensions: 6160
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)