BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG04FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1394 0.0
>3x_Contig1721
Length = 17834
Score = 1394 bits (703), Expect = 0.0
Identities = 817/842 (97%), Gaps = 10/842 (1%)
Strand = Plus / Minus
Query: 87 aaccatttgtcatttaggaagcaaactgaatctaaatcaaagaataactcatcaacgatg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10825 aaccatttgtcatttaggaagcaaactgaatctaaatcaaagaataactcatcaacgatg 10766
Query: 147 aagatggctgaatacgttaagtcagatattttatctaagaaaactaaacctatagcctgt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10765 aagatggctgaatacgttaagtcagatattttatctaagaaaactaaacctatagcctgt 10706
Query: 207 tttcgaattgatccaaacaactttatcatatgctatgatgaagccattatacgaatcaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10705 tttcgaattgatccaaacaactttatcatatgctatgatgaagccattatacgaatcaat 10646
Query: 267 aagtttggggaaattccggattggaaaaaggatattcttgtattagatttctattgcata 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10645 aagtttggggaaattccggattggaaaaaggatattcttgtattagatttctattgcata 10586
Query: 327 ggcgtgtccttaaaccttggtcacctcatacttgcaggtgataatcttgtacaggtgtac 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10585 ggcgtgtccttaaaccttggtcacctcatacttgcaggtgataatcttgtacaggtgtac 10526
Query: 387 aacttacgtttcgtagacaccggagaatgggcacttaacacaatcaaacccgttcaaatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10525 aacttacgtttcgtagacaccggagaatgggcacttaacacaatcaaacccgttcaaatt 10466
Query: 447 atcaagggcaagaaaattaagattactgacacttcacaggattgcacaagtatagtattg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10465 atcaagggcaagaaaattaagattactgacacttcacaggattgcacaagtatagtattg 10406
Query: 507 acccacccgaacattgcaggaagacagctactcttgcactttaacctatcagtttaaaaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10405 acccacccgaacattgcaggaagacagctactcttgcactttaacctatcagtttaaaaa 10346
Query: 567 aggctcgctagttgatgccaaggtacattgagtatgattccgaagtaacatggtaatatc 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10345 aggctcgctagttgatgccaaggtacattgagtatgattccgaagtaacatggtaatatc 10286
Query: 627 tccacatacaaccctgcgaaatcagtattataaaccgtttatgtagtaaaagaccctttc 686
|||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||
Sbjct: 10285 tccacatacaaccctgcgaaatcagtattataaa-cgtttatgtagt-aaagaacctttc 10228
Query: 687 attgttacacccacacttactctcatggagttgcanttattttccttggttattctttaa 746
||||| ||||||||||||||||||||||||||||| ||| |||||||| ||| |||||||
Sbjct: 10227 attgtaacacccacacttactctcatggagttgcaatta-tttccttgttta-tctttaa 10170
Query: 747 taagtgaattatatcaatactttcttcataataagcaaa-ttagttgtatgattgaataa 805
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 10169 taagtgaattatatcaatactttcttcataat-agcaaatttagttgtatgattgaataa 10111
Query: 806 ttctt-aattaaaccaccattgtc-attaataacccatt-ttgaattaaacaatcacctt 862
||||| ||| |||||||||||||| || ||||||||||| | |||| ||||||||| |||
Sbjct: 10110 ttcttaaataaaaccaccattgtcaataaataacccattatagaataaaacaatcaactt 10051
Query: 863 a-ggcgaaggaaagtttttgtgtcatggcctgaagatcgcttttggggtggcattggttt 921
| |||||||||||||||||||||||||| |||| |||||||||| | ||| |||| ||||
Sbjct: 10050 agggcgaaggaaagtttttgtgtcatggtctgatgatcgctttttgtgtgtcatttgttt 9991
Query: 922 cc 923
||
Sbjct: 9990 cc 9989
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6065
Number of Sequences: 1807
Number of extensions: 6065
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)