BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG04RM1.SCF screened BAC_end
(890 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1487 1051 0.0
>3x_Contig1487
Length = 9002
Score = 1051 bits (530), Expect = 0.0
Identities = 615/634 (97%), Gaps = 7/634 (1%)
Strand = Plus / Minus
Query: 47 tgaaggctctgtgaagatccaacgcgagtgttggcatcgtataaggaaggcgatggggag 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1577 tgaaggctctgtgaagatccaacgcgagtgttggcatcgtataaggaaggcgatggggag 1518
Query: 107 aggaacatttcatcaagttgggagacagtggtaccgtcagatgaatcaggcgtttgccgc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1517 aggaacatttcatcaagttgggagacagtggtaccgtcagatgaatcaggcgtttgccgc 1458
Query: 167 tgtgactccacttctagatagctggggggtaaatcatgctggtcagggtttacatttcct 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1457 tgtgactccacttctagatagctggggggtaaatcatgctggtcagggtttacatttcct 1398
Query: 227 cgtgggatgttgcgatgtaaagcattatacatttcaaacgagggaagaacatcgatcata 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1397 cgtgggatgttgcgatgtaaagcattatacatttcaaacgagggaagaacatcgatcata 1338
Query: 287 tgatgagtatccgaaacttcactaccgtcctcgttcttcaacttcgattgtcctgatttt 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1337 tgatgagtatccgaaacttcactaccgtcctcgttcttcaacttcgattgtcctgatttt 1278
Query: 347 aataccatagcagaattactactactgctcgagcctccattagcaaatgattttcgaagc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1277 aataccatagcagaattactactactgctcgagcctccattagcaaatgattttcgaagc 1218
Query: 407 cgaaataaatttgatgcagatgaactcctgaagaagagatttgatgatccagaaggattc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1217 cgaaataaatttgatgcagatgaactcctgaagaagagatttgatgatccagaaggattc 1158
Query: 467 tttgttgctccccgacctctcaaaatggactcatcctcggtctgctggttcttcaactgt 526
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1157 tttgttgctccccgacctctcaaaatggactcatcctcggtctgctgtttcttcaactgt 1098
Query: 527 ggtctcttatcggaccccat-atatgacggtgctgggatactttttttgtaccacagatt 585
|||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 1097 ggtctcttatcggaccccataatatgacggtgctgggatacttttttgttaccacagatt 1038
Query: 586 gagagttgagtccttagctgtggaacagg-cgtt-attgatagg-cctatgctgcgatta 642
|||||| ||||| |||| ||||||| |||| ||||||||| ||||||||||||| |
Sbjct: 1037 gagagtgaggtcctaagcttgtgaacaggtcgttaattgataggccctatgctgcgataa 978
Query: 643 aaa-gac-gcgaaataga-tactactttttccac 673
||| ||| |||||||||| ||||||||| |||||
Sbjct: 977 aaaggacagcgaaatagattactactttctccac 944
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6329
Number of Sequences: 1807
Number of extensions: 6329
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 890
length of database: 10,358,551
effective HSP length: 16
effective length of query: 874
effective length of database: 10,329,639
effective search space: 9028104486
effective search space used: 9028104486
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)