BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG05FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1219 0.0
>3x_Contig1321
Length = 8217
Score = 1219 bits (615), Expect = 0.0
Identities = 736/762 (96%), Gaps = 12/762 (1%)
Strand = Plus / Minus
Query: 88 attaaatgacaataacttaacaagtttacctgcggaaatcaagtactcaaaaaaactaat 147
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 7660 attaaatgacaataacttaacaagttgtactgcggaaatcaagtactcaaaaaaactaat 7601
Query: 148 tcatttttctgccgccaacaacaagttggatagtattccggaagaaataggagaactctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7600 tcatttttctgccgccaacaacaagttggatagtattccggaagaaataggagaactctc 7541
Query: 208 caatcttaaatcacttgatttacattgtaataatattagagaattacccatttcaattgt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7540 caatcttaaatcacttgatttacattgtaataatattagagaattacccatttcaattgt 7481
Query: 268 aaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccccggatt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7480 aaatttagagctaacaacattaaatttctcctctaatttacttggctacaaccccggatt 7421
Query: 328 agaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgctgacaa 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7420 agaggactatgaaaatacccctttatcaaaatcattactatttctcaatactgctgacaa 7361
Query: 388 caatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagataatcaa 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7360 caatctcaataatgagatgcttcctttattcaacttcaacactagcttgaagataatcaa 7301
Query: 448 tctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgacagagtt 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7300 tctttcttataatgatatttctgatatttctgcattaaacctaccatcgttgacagagtt 7241
Query: 508 gtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaatgaagaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7240 gtatctatccggcaatgctatcaccagcttgcccggtgaagtgttccaaagaatgaagaa 7181
Query: 568 tttgaaggtgataatgttaaatggtaataagctgatgtcactaccatcggagctctctca 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7180 tttgaaggtgataatgttaaatggtaataagctgatgtcactaccatcggagctctctca 7121
Query: 628 actttcgattttgacagttctagatgttggttcaaatcaattaaaatacaatatctcaaa 687
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7120 actttcgaatttgacagttctagatgttggttcaaatcaattaaaatacaatatctcaaa 7061
Query: 688 ctaccattatgattgggaactgggattaataatttggacccttaaaatattgaaactttt 747
|||||||||||||| |||||| |||| ||||||||| ||| ||||||||| |||||||
Sbjct: 7060 ctaccattatgatt-ggaact-ggatgaataatttgaacc--taaaatatttgaactttt 7005
Query: 748 ctggggattaaaaggttcgaaattaaattaattgattggcccctgatcctaaaaccaaat 807
|| |||| |||||||||||||| |||| | | ||||||| ||||||| |||||| || ||
Sbjct: 7004 ct-gggaataaaaggttcgaaa-taaagtcaatgattgg-ccctgatactaaaa-cagat 6949
Query: 808 ttgtcccgacttggacaattcttaaaacagtttaaaaatttt 849
|||| ||||||| ||||| ||||||||||| |||||||||||
Sbjct: 6948 ttgt-ccgactt-gacaa-tcttaaaacag-ttaaaaatttt 6911
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7987
Number of Sequences: 1807
Number of extensions: 7987
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)