BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZG05RM1.SCF screened BAC_end (896 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1228 1362 0.0 >3x_Contig1228 Length = 5992 Score = 1362 bits (687), Expect = 0.0 Identities = 739/752 (98%), Gaps = 4/752 (0%) Strand = Plus / Plus Query: 45 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 104 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 521 tatgatttattagaatcggcaaagagttcgtacactctttcgtcaaatcagcatcaattg 580 Query: 105 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 581 gcatatgatgtgctgttaagtttctatgacttgctagacatcattgagacattcgaggat 640 Query: 165 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 224 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 641 aaagaggaattggaagatgggttggatagcgatgatgaaggtgaggaattagtagaggtt 700 Query: 225 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 gtattgcacgaaaaccatccactaacgaaaatcaagaaaaacatgaatcagaactacgag 760 Query: 285 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 761 tggttgaaagaaaatttgttgaatttgttcaatgacatatcttcatcattttgcaacaag 820 Query: 345 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 821 gtcggccctgacatcgataaagatcatccaacagtagttttgttcaagagtatcgcgcgt 880 Query: 405 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 881 acgcttggccaactttacttaaaactggccgaggaaccatcaaaaacttttgctgaattg 940 Query: 465 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 941 atgtatgatagcgacgatgaagagcaaactgataaggaggctctagagaaggctaaaaat 1000 Query: 525 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1001 gcacaatcgaaagccattccattggttgaatatgctatcaggtacttgcaagaagcgaaa 1060 Query: 585 gtggaagatgaacctcanacctggnttcgacgtcgctgaagcgatcattgatttanggaa 644 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||| Sbjct: 1061 gtggaagatgaacctcaaacctggg-tcgacgtcgctgaagcgatcattgatttagggaa 1119 Query: 645 cctttacgattacgaatcgaaagaacaggaagactcttactagagagcagaggaaatttt 704 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 1120 cctttacgattacgaatcgaaagaacaggaagactcttacaagagagcagaggaaatttt 1179 Query: 705 actggaagctaacaaggcaactcatgggtaaataccaagttattctggacaatttgttga 764 |||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 1180 actgaaggctaacaaggcaactcat-ggtaaataccaagttatcctggacaatttgttga 1238 Query: 765 acaaaggattaggttt-cccttaatgtatagt 795 ||||| ||||| |||| |||| |||||||||| Sbjct: 1239 acaaa-gattaagtttcccctcaatgtatagt 1269 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7712 Number of Sequences: 1807 Number of extensions: 7712 Number of successful extensions: 68 Number of sequences better than 1.0e-20: 1 length of query: 896 length of database: 10,358,551 effective HSP length: 16 effective length of query: 880 effective length of database: 10,329,639 effective search space: 9090082320 effective search space used: 9090082320 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)