BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG06FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1013 0.0
>3x_Contig1774
Length = 27771
Score = 1013 bits (511), Expect = 0.0
Identities = 616/646 (95%), Gaps = 4/646 (0%)
Strand = Plus / Minus
Query: 88 atcttgccttcaatatacttgtccatcttccagtttgacaattatgttttaatgttagtt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24204 atcttgccttcaatatacttgtccatcttccagtttgacaattatgttttaatgttagtt 24145
Query: 148 ttggttgaagatcttccggaagtgttccactgacatcaaataatctaattgtgtcatcgt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24144 ttggttgaagatcttccggaagtgttccactgacatcaaataatctaattgtgtcatcgt 24085
Query: 208 atccattgcaaactaatgtttcatccatcggagaatatgatactgcggagacacttaatc 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24084 atccattgcaaactaatgtttcatccatcggagaatatgatactgcggagacacttaatc 24025
Query: 268 tagaatcatatgtagcaacaatttcatgggatgcgaagtcttcgtattgtgaccactctg 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24024 tagaatcatatgtagcaacaatttcatgggatgcgaagtcttcgtattgtgaccactctg 23965
Query: 328 gtttattgacaatttttcttgtatcccatattttaagtgttctatctaatgatccggtcg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23964 gtttattgacaatttttcttgtatcccatattttaagtgttctatctaatgatccggtcg 23905
Query: 388 ctatttcatagggccgcttnaggtttatgctgaaggaaccgatttttttgtctgacaatc 447
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 23904 ctatttcatagggccgcttagggtttatgctgaaggaaccgatttttttgtctgacaatc 23845
Query: 448 ttttcaaattaatttctgttggtttggtacgaacgtcaaacgtagtgaattcgccgctca 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23844 ttttcaaattaatttctgttggtttggtacgaacgtcaaacgtagtgaattcgccgctca 23785
Query: 508 atgtcgtcatgaattagacgtttcgatcattatagtttgaattg-aaatcacttattcct 566
|||||||||||||| ||||||| ||||||||||| |||||||| ||||||||||| |||
Sbjct: 23784 atgtcgtcatgaataagacgttcggatcattatag-ttgaattgaaaatcacttatccct 23726
Query: 567 attggatcatcatactcattctttacccctagtatttctttactgttcatattttgtaga 626
| ||||||||||||||||||||||| | |||||||||||| ||||||||||| |||||||
Sbjct: 23725 aatggatcatcatactcattctttaacactagtatttcttcactgttcatatcttgtaga 23666
Query: 627 ttaattgatcctaaatattcatcgtattaggcttgctattaacctactgcttatcggggc 686
|||||||||| ||||||| |||||||| |||| ||||| |||||||||||| || |||
Sbjct: 23665 ttaattgatcttaaatatccatcgtatgaggc-tgctagtaacctactgctatccgtggc 23607
Query: 687 gtatgttttcaattcttccttactttttgggaaataaatttacttt 732
||||| | |||||||||||| ||||||| |||||| || |||||
Sbjct: 23606 gtatg-tgtcaattcttcctacatttttggtaaataatttcacttt 23562
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8489
Number of Sequences: 1807
Number of extensions: 8489
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)