BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG06RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1294 0.0
>3x_Contig1659
Length = 17570
Score = 1294 bits (653), Expect = 0.0
Identities = 758/784 (96%), Gaps = 7/784 (0%)
Strand = Plus / Plus
Query: 47 aattctgtgtttccgggtaacagcgaatgcttttggtggttctgtcgtgtatccgggtaa 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13612 aattctgtgtttccgggtaacagcgaatgcttttggtggttctgtcgtgtatccgggtaa 13671
Query: 107 tatactgtcgcgcgtcagttcagtttccaaatgtattgaaactgtcacaaaagataatat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13672 tatactgtcgcgcgtcagttcagtttccaaatgtattgaaactgtcacaaaagataatat 13731
Query: 167 gacagcagcgaaatattactagccgatacatcgatctacagtgtttaaatcaccagcata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13732 gacagcagcgaaatattactagccgatacatcgatctacagtgtttaaatcaccagcata 13791
Query: 227 aatggtatttacgtccactaacgaccttttttttactccaatattacatgtttaaatagc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13792 aatggtatttacgtccactaacgaccttttttttactccaatattacatgtttaaatagc 13851
Query: 287 agcagtacaaccctgcataacaatttacttaactttatcaccaagtaagtgtatatcaag 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13852 agcagtacaaccctgcataacaatttacttaactttatcaccaagtaagtgtatatcaag 13911
Query: 347 atggtctcgacactcattttactacaatgttccgttgtctcaatagcgactgcatatgca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13912 atggtctcgacactcattttactacaatgttccgttgtctcaatagcgactgcatatgca 13971
Query: 407 gccgttattgatacttcgaataaggatccactatctgtagctaaagacaacggtttggct 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13972 gccgttattgatacttcgaataaggatccactatctgtagctaaagacaacggtttggct 14031
Query: 467 atagaacaagagtttaggttcccgattgggagatcaccaagatctcaggcganaactcca 526
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 14032 atagaacaagagtttaggttcccgattgggagatcaccaagatctcaggcgaaaactcca 14091
Query: 527 ttccctgagtggttaactgccttcacaggtttaactgaatggccaggttccaatccacct 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14092 ttccctgagtggttaactgccttcacaggtttaactgaatggccaggttccaatccacct 14151
Query: 587 tacattccgttggatttcattgatttcgacaagattgagaaatgggaaccgtacaaagag 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14152 tacattccgttggatttcattgatttcgacaagattgagaaatgggaaccgtacaaagag 14211
Query: 647 ggttgatgtaacgtgaacccgagggaatcgtgctcttttgattgt-acaaa-gtgttgaa 704
||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 14212 ggtagatgtaacgtgaacccgagggaatcgtgctcttttgattgtcacaaatgtgttgaa 14271
Query: 705 ccc-atgatg-tcatttttgggagaaactttct-aaacttttcaggagggggcattttca 761
||| |||||| ||||| ||| |||||||| ||| ||||||| | || ||| || | |||
Sbjct: 14272 cccgatgatgttcattcttgtgagaaactatctcaaactttcgatgatgggcca-tctca 14330
Query: 762 tcatacttttaccctttttagatcattggaagcccaaaacttcttttttcacccttggaa 821
||||||||| || | | |||||||||| ||||| ||| ||| |||||||||||||||| |
Sbjct: 14331 tcatactttaacac-tattagatcatttgaagcacaagactacttttttcacccttggta 14389
Query: 822 tgaa 825
||||
Sbjct: 14390 tgaa 14393
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6286
Number of Sequences: 1807
Number of extensions: 6286
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)