BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG07FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1421 573 e-163
3x_Contig748 264 3e-70
>3x_Contig1421
Length = 8026
Score = 573 bits (289), Expect = e-163
Identities = 349/369 (94%)
Strand = Plus / Plus
Query: 86 tggattgaatagaatacttcagaagatgcaattactagactatccaccgttgtcaacaat 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7617 tggattgaatagaatacttcagaagatgcaattactagactatccaccgttgtcaacaat 7676
Query: 146 gttgctacaatttgaggatgctgcaatcgacgactataattctttgatagatagtcagaa 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7677 gttgctacaatttgaggatgctgcaatcgacgactataattctttgatagatagtcagaa 7736
Query: 206 atttactgaaaatgttgacatggatgatccagtgtcaattttacaaaaactcacttcttc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7737 atttactgaaaatgttgacatggatgatccagtgtcaattttacaaaaactcacttcttc 7796
Query: 266 cttcaagggcacagaggcagaatcatatttattatcaatgcttcaaaacctttttctttc 325
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7797 cttcaagggcacagaggaagaatcatatttattatcaatgcttcaaaacctttttctttc 7856
Query: 326 aagcaataagaacgctcaagaaagtgatgacccaggtaagaatgttcaacaattgaagtt 385
||||||||| ||||||||||||| ||||||| |||| ||||| |||||||||| |||||
Sbjct: 7857 aagcaataaaaacgctcaagaaaatgatgacacaggaaagaaagttcaacaatagaagta 7916
Query: 386 gattgattccttgatttcgaatgttgcaataaccactcttgactctgagtcgaacttcaa 445
|||||||| |||||||||| || | ||||||||||| |||||| | ||| ||||||
Sbjct: 7917 gattgattacttgatttcgggtgataagataaccactctaaactctgtgacgatcttcaa 7976
Query: 446 cgttgcaat 454
|||||||||
Sbjct: 7977 cgttgcaat 7985
>3x_Contig748
Length = 2621
Score = 264 bits (133), Expect = 3e-70
Identities = 193/209 (92%), Gaps = 3/209 (1%)
Strand = Plus / Plus
Query: 672 tacagtcccgaattggaagaactaaaaaaaagacatctttttggagaaacatgaacatga 731
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 8 tacagtcccgaattggaagaactaaaaaaaagacatctttt-ggagaaacatgaacatga 66
Query: 732 gattgaactttcgaaaaatgct-acgattgtgaattctaagaacagtgacgaccttcaat 790
|||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct: 67 gattgaactt-cgaaaaatgcttacgattgtgaattctaagacaagtgacgacctcgaat 125
Query: 791 caggttcaactgttcaaaatgacccttaaccattggatccttgaagaaaaacttgcctaa 850
|||||||||||||||||||||||||| |||||||| ||||| |||||||||| | ||
Sbjct: 126 caggttcaactgttcaaaatgaccctaaaccattgaatcctgaaagaaaaactgccatac 185
Query: 851 caaacgttttacaaagaagcttgcaaaaa 879
||||||||||||||||||||||||||||
Sbjct: 186 aaaacgttttacaaagaagcttgcaaaaa 214
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8022
Number of Sequences: 1807
Number of extensions: 8022
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)