BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1680 1292 0.0
>3x_Contig1680
Length = 12597
Score = 1292 bits (652), Expect = 0.0
Identities = 700/712 (98%), Gaps = 3/712 (0%)
Strand = Plus / Plus
Query: 48 tggaagaac-aggtgctggtgaccaaggtatcatgttcggttatgctactgacgaaaccc 106
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5517 tggaagaactaggtgctggtgaccaaggtatcatgttcggttatgctactgacgaaaccc 5576
Query: 107 cagaacatttgccattgaccattttgttggcccacaagttgaacatggctatggctgatg 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5577 cagaacatttgccattgaccattttgttggcccacaagttgaacatggctatggctgatg 5636
Query: 167 ccagaagagacggttctttgccatgggttagacctgataccaagactcaagttaccgttg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5637 ccagaagagacggttctttgccatgggttagacctgataccaagactcaagttaccgttg 5696
Query: 227 aatacaaggaagataatggtagatggatcccattgagaatcgacaccatcgttatctctg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5697 aatacaaggaagataatggtagatggatcccattgagaatcgacaccatcgttatctctg 5756
Query: 287 ctcaacacgccgaagaaatcagcactgctgatttgcgtcaatctctaagaactaacatca 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5757 ctcaacacgccgaagaaatcagcactgctgatttgcgtcaatctctaagaactaacatca 5816
Query: 347 tcgacaaggtttgtccagccgagatgttggatgaaaacaccaagtactacatccaaccat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5817 tcgacaaggtttgtccagccgagatgttggatgaaaacaccaagtactacatccaaccat 5876
Query: 407 ctggtagattcgttatcggtggtcctcaaggtgatgccggtttgactggtagaaagatta 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5877 ctggtagattcgttatcggtggtcctcaaggtgatgccggtttgactggtagaaagatta 5936
Query: 467 tcgtcgatgcttacggtggtgcttctgctgtcggtggtggtgctttctccggtaaggatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5937 tcgtcgatgcttacggtggtgcttctgctgtcggtggtggtgctttctccggtaaggatt 5996
Query: 527 actccaaggtcgaccgttccgctgcttacgccgctagatgggttgctaagtctttggtcc 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5997 actccaaggtcgaccgttccgctgcttacgccgctagatgggttgctaagtctttggtcc 6056
Query: 587 acgctggtatctgtaagagagttcaagtccaattctcttacgctatcggtatcgctgaac 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6057 acgctggtatctgtaagagagttcaagtccaattctcttacgctatcggtatcgctgaac 6116
Query: 647 ctttattcttgcatgtcgacacctatggtaccgctaccattccagatgaagaagtttttt 706
|||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || ||
Sbjct: 6117 ctttatccttgcatgtcgacacctatggtaccgctaccatcccagatgaagaag-ttatt 6175
Query: 707 gaaatattcaggagaaacttcgactggagacctggtgtcccttgtgaaggaa 758
||||| ||| || |||||||||| |||||||||||| |||||||||||||
Sbjct: 6176 gaaatcatcaagaagaacttcgacttgagacctggtgt-ccttgtgaaggaa 6226
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,461
Number of Sequences: 1807
Number of extensions: 11461
Number of successful extensions: 73
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)