BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG08FM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig690 1330 0.0
>3x_Contig690
Length = 2822
Score = 1330 bits (671), Expect = 0.0
Identities = 747/763 (97%), Gaps = 7/763 (0%)
Strand = Plus / Minus
Query: 86 tatgagggactagacactggtaatgatgttgatatacccaatagcatcaaagggaaagac 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 tatgagggactagacactggtaatgatgttgatatacccaatagcatcaaagggaaagac 1123
Query: 146 ttaatgataatgaaaaaagttcttgagaaagtgaggcataagactaaagctatcaacaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1122 ttaatgataatgaaaaaagttcttgagaaagtgaggcataagactaaagctatcaacaag 1063
Query: 206 aacctattagccttggagaatgttttgttggatagggctgctgagatcggagacaatgat 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1062 aacctattagccttggagaatgttttgttggatagggctgctgagatcggagacaatgat 1003
Query: 266 gctatatcgctcttatgttttgatgttctaaaggatccagacagtaatactgaagatgac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1002 gctatatcgctcttatgttttgatgttctaaaggatccagacagtaatactgaagatgac 943
Query: 326 gtatctcatgcaaagaaattgattaagaacctctatcaaatgaatcaccctttaaccgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 942 gtatctcatgcaaagaaattgattaagaacctctatcaaatgaatcaccctttaaccgtc 883
Query: 386 aaactaactgctgatatagctctgaagaaccatgacgatgctactgccgaagtgtactat 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 882 aaactaactgctgatatagctctgaagaaccatgacgatgctactgccgaagtgtactat 823
Query: 446 atgaaatttttggatttacagaatgatactttcttagctggagaagtatacggtcaattg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 atgaaatttttggatttacagaatgatactttcttagctggagaagtatacggtcaattg 763
Query: 506 ggccagatccactttagaaaaccgaatcttattgaagcagagaaatgtttcttaaaatca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 ggccagatccactttagaaaaccgaatcttattgaagcagagaaatgtttcttaaaatca 703
Query: 566 atcaaactttgtcctattgattactcggtacgatcgtactttttgttaggacaaatgtat 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atcaaactttgtcctattgattactcggtacgatcgtactttttgttaggacaaatgtat 643
Query: 626 gtgaataacgatatatttaaagccaggtacttaattgaaagcagtgccacccaaggcttc 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtgaataacgatatatttaaagccaggtacttaattgaaagcagtgccacccaaggcttc 583
Query: 686 aaggaatca-ttagaacactagggttgctcgaaatgaattactttcaagaa-taccccca 743
||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |
Sbjct: 582 aaggaatcatttagaacactagggttgctcgaaatgaattac-ttcaagaattaccccaa 524
Query: 744 agctccaggatggttttaagttggaatgggaactctatgatactgaatggtttcgttggg 803
|||| ||||| | |||||||||| | |||||||||||||||||||| |||||||| ||
Sbjct: 523 agct-caggaatggtttaagttgggaatggaactctatgatactgaat-gtttcgtt-gg 467
Query: 804 ctatttccattgttccaatgaaaaataatgaattattgctggc 846
||||||| |||| | ||||||||||||||||||||||||||||
Sbjct: 466 ctatttcgattg-tacaatgaaaaataatgaattattgctggc 425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7270
Number of Sequences: 1807
Number of extensions: 7270
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)