BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG08RM1.SCF screened BAC_end
(905 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1454 1277 0.0
>3x_Contig1454
Length = 9243
Score = 1277 bits (644), Expect = 0.0
Identities = 772/808 (95%), Gaps = 7/808 (0%)
Strand = Plus / Plus
Query: 49 accacttcataatggtatagtagttgggcatagaggcaaagcaattaaaatagatatata 108
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3605 accacttcataatggtagagtagttgggcatagaggcaaagcaattaaaatagatatata 3664
Query: 109 atcaaacctcgtgtcaactgttgattactatgttccagaatttatttggattactttagg 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3665 atcaaacctcgtgtcaactgttgattactatgttccagaatttatttggattactttagg 3724
Query: 169 tatatttccagtgaaatctgctacgatatagagtaaacgtctgacatatattggtagatt 228
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 3725 tatatttccagtgaaatctgctacgatatagagtaaacgtctgacataaattggtagatt 3784
Query: 229 tttgacggttgccatgaagaaattcggtgttgcggccttcggcgagtctggtcaatatga 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3785 tttgacggttgccatgaagaaattcggtgttgcggccttcggcgagtctggtcaatatga 3844
Query: 289 tcttgcctcgaacaagttaggctcacagaataatgaattgaatgagcagctttcaatctt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3845 tcttgcctcgaacaagttaggctcacagaataatgaattgaatgagcagctttcaatctt 3904
Query: 349 tcaagttaaactagtggaatttgccaggcaacataataaagagctccgagatgttccccg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3905 tcaagttaaactagtggaatttgccaggcaacataataaagagctccgagatgttccccg 3964
Query: 409 ttttcgtgcgaagtttatgagaatgtgctcagcgataggcattgatccattatctatatt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3965 ttttcgtgcgaagtttatgagaatgtgctcagcgataggcattgatccattatctatatt 4024
Query: 469 cgataagaatagccatttattccatatagatgacttctactatcagatatgcgtgaagat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4025 cgataagaatagccatttattccatatagatgacttctactatcagatatgcgtgaagat 4084
Query: 529 tatagagatttgccggaacacaaaggatgtcaacggtggtgttatatctttagaagagtt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4085 tatagagatttgccggaacacaaaggatgtcaacggtggtgttatatctttagaagagtt 4144
Query: 589 gcatgtcanttatttcaag-acatgaacatagaaatggaggacattgaaaaggccattat 647
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4145 gcatgtcaattatttcaagaacatgaacatagaaatggaggacattgaaaaggccattat 4204
Query: 648 aatgttnggacccctagacggtggcttttgagtttgttactattagacagaanaagttct 707
|||||| |||||||||||||||||| |||||||| ||||||| |||||||| |||||||
Sbjct: 4205 aatgttgggacccctagacggtggc-tttgagttgtttactataagacagaaaaagttct 4263
Query: 708 ttcgttgtgtgccaaatgaccttacggattgacagactaaatttc-tgaaatatgttctt 766
| ||| ||||||||||||| ||||||||| ||||||||| ||| |||||||||||||
Sbjct: 4264 tacgtagtgtgccaaatgaacttacggatgaccagactaaaattcttgaaatatgttcta 4323
Query: 767 ttattgggatattgcagtattaacctctttttaaagacaacctctactgggaaagagtaa 826
| | |||||||| |||||| | ||||| ||| || ||||||| ||||| |||||||||
Sbjct: 4324 tca-tgggatatgccagtat--aactcttcttagagccaacctcaactggaaaagagtaa 4380
Query: 827 gaaatcaattcatttttggatgggatgg 854
||| || | ||| |||||||||| ||||
Sbjct: 4381 gaagtc-agtcagttttggatggaatgg 4407
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6095
Number of Sequences: 1807
Number of extensions: 6095
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 905
length of database: 10,358,551
effective HSP length: 16
effective length of query: 889
effective length of database: 10,329,639
effective search space: 9183049071
effective search space used: 9183049071
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)