BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZG09FM1.SCF screened BAC_end (925 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig872 1037 0.0 >3x_Contig872 Length = 3350 Score = 1037 bits (523), Expect = 0.0 Identities = 605/625 (96%), Gaps = 6/625 (0%) Strand = Plus / Plus Query: 87 tattgagtaaatctagcaatgcttcaagatcagattttttcttctcttcataatcgacag 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2297 tattgagtaaatctagcaatgcttcaagatcagattttttcttctcttcataatcgacag 2356 Query: 147 ttgcagtgtcgccatagtaaggaggtgctttgttcgttagatgatcatttaacgatgatt 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2357 ttgcagtgtcgccatagtaaggaggtgctttgttcgttagatgatcatttaacgatgatt 2416 Query: 207 gaagattagaaacgagggaatttctcctggatgaagatgcactagtattttcgcttgttt 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2417 gaagattagaaacgagggaatttctcctggatgaagatgcactagtattttcgcttgttt 2476 Query: 267 gtccactgccgatctcccaagttgttgccaaaggatttgagcttgatcgtattatattaa 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2477 gtccactgccgatctcccaagttgttgccaaaggatttgagcttgatcgtattatattaa 2536 Query: 327 cagatgtcggaaggcctttttgttgttggttatcgagctgatttgacgatgctgaatttt 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2537 cagatgtcggaaggcctttttgttgttggttatcgagctgatttgacgatgctgaatttt 2596 Query: 387 tggagttcaaactaaccaaagtttttacaggagacaagtcttgattcttgttggtgaaaa 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2597 tggagttcaaactaaccaaagtttttacaggagacaagtcttgattcttgttggtgaaaa 2656 Query: 447 aggccgataatgcagctgatgaagcatttcgcagtacttttgggtggtaccggtgtctgt 506 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2657 aggccgataatgcagctgatgaagcatttcgcagtac-tttgggtggtaccggtgtctgt 2715 Query: 507 agttgagatttcttgagaattagtttcttagcttcgtcgatattaac-aaagtatgaggc 565 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2716 agttgagatttctgaggaattagtttcttagcttcgtcgatattaacaaaagtatgaggc 2775 Query: 566 ttatcagaatcgctcanaagtgaaggattatttgatcatattttcantgaaccgttttca 625 | |||||||||||||| ||||||||||||| ||||||||| ||||| || |||| ||||| Sbjct: 2776 tcatcagaatcgctcaaaagtgaaggatta-ttgatcataatttcaatggaccg-tttca 2833 Query: 626 ttatcgttagccgtaccgacaacgagtaaagtgattatgggttgtaccaatattcatgtg 685 |||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| Sbjct: 2834 atatcgttagccgtaccgacaacgagtaaggtgataatgggttgtacgaatatgcatgt- 2892 Query: 686 gttgaaaaattttgggaacctcagg 710 |||||| || ||||||||||||||| Sbjct: 2893 gttgaagaa-tttgggaacctcagg 2916 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7295 Number of Sequences: 1807 Number of extensions: 7295 Number of successful extensions: 48 Number of sequences better than 1.0e-20: 1 length of query: 925 length of database: 10,358,551 effective HSP length: 16 effective length of query: 909 effective length of database: 10,329,639 effective search space: 9389641851 effective search space used: 9389641851 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)