BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG09RM1.SCF screened BAC_end
(895 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1630 1189 0.0
>3x_Contig1630
Length = 14771
Score = 1189 bits (600), Expect = 0.0
Identities = 722/748 (96%), Gaps = 11/748 (1%)
Strand = Plus / Minus
Query: 54 ttactcttcacaaacactaatattttagcgtttctcgaagcactgctcttgatgtcgtgt 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10373 ttactcttcacaaacactaatattttagcgtttctcgaagcactgctcttgatgtcgtgt 10314
Query: 114 attattcttagtaagagtagtggcttgaacagactcttagcagtaggaatattgacattg 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10313 attattcttagtaagagtagtggcttgaacagactcttagcagtaggaatattgacattg 10254
Query: 174 agttcttgcaatttcttaggtattgaatataatttaacagaatctgttaggaagatcttg 233
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 10253 agttcttgcaatttcttaggtattgaatataatttaacagaatctgtgaggaagatcttg 10194
Query: 234 gggttgtggagatacaaattgtacaacttttctgcattcgtagtcaaagtagcagaaaag 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10193 gggttgtggagatacaaattgtacaacttttctgcattcgtagtcaaagtagcagaaaag 10134
Query: 294 accattttgattacgtttcctggacgtttatcctgcttatcgtttgtcaaatggtggaaa 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10133 accattttgattacgtttcctggacgtttatcctgcttatcgtttgtcaaatggtggaaa 10074
Query: 354 agcacttggttccaattttggaatgactgatttaatagtcggtctgcttcatcaaggact 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10073 agcacttggttccaattttggaatgactgatttaatagtcggtctgcttcatcaaggact 10014
Query: 414 aagaacttcaaagtttttaggtcaaatgattccatctgcaagtgatcgaccagtctgccc 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10013 aagaacttcaaagtttttaggtcaaatgattccatctgcaagtgatcgaccagtctgccc 9954
Query: 474 ggagtgatgattagaatgtctggagagttatacaaaaatttgttgtgttcttctttc-ag 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9953 ggagtgatgattagaatgtctggagagttatacaaaaatttgttgtgttcttctttcaag 9894
Query: 533 gagttctcgagtttcgacattgatacattgagactggtcccttgacttagtttagagaga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9893 gagttctcgagtttcgacattgatacattgagactggtcccttgacttagtttagagaga 9834
Query: 593 cattcgtagacttgatgaatt-aaattttagttggaacc-aaattattgccct-acttta 649
|| |||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||
Sbjct: 9833 caatcgtagacttgatgaattaaaattttagtaggaaccaaaattattgccctaacttta 9774
Query: 650 tttactgttctagatctc-aaattggaaccaaa-ggacacgatatgcttaagtcttaccg 707
|| ||||||||||||||| ||||| |||||||| ||||| ||||||| | |||||||||
Sbjct: 9773 ttcactgttctagatctcaaaatttgaaccaaagggacagaatatgctaaggtcttaccg 9714
Query: 708 gaaccagtgaatgcg-ttactaatttat-acc-acttgtcttg-ggaaagttttctgttt 763
|||||||| ||||| |||||||| ||| ||| ||| |||||| | ||||||||||||||
Sbjct: 9713 gaaccagttgatgcgtttactaatatatcaccaactcgtcttgtgaaaagttttctgttt 9654
Query: 764 gctttaaaagatga-ttttgaagcggga 790
|||||||||||||| ||| |||||||||
Sbjct: 9653 gctttaaaagatgagtttagaagcggga 9626
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7140
Number of Sequences: 1807
Number of extensions: 7140
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)