BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG10FM1.SCF screened BAC_end
(909 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig717 1189 0.0
>3x_Contig717
Length = 3533
Score = 1189 bits (600), Expect = 0.0
Identities = 668/686 (97%), Gaps = 4/686 (0%)
Strand = Plus / Minus
Query: 87 aacttacaatccgcccatatgcaaagcaggaacgtgcttaggtggaccttcgcctgtttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2982 aacttacaatccgcccatatgcaaagcaggaacgtgcttaggtggaccttcgcctgtttg 2923
Query: 147 ttctagcaattccctttttttgttcaatctattcgttatgtattcactcattcttacgtc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2922 ttctagcaattccctttttttgttcaatctattcgttatgtattcactcattcttacgtc 2863
Query: 207 aacgttttcgtattttttcaaccatggatgttctaatagagcggcataagtgggtctacg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aacgttttcgtattttttcaaccatggatgttctaatagagcggcataagtgggtctacg 2803
Query: 267 ttcagggattttttgcaaacacatggaaacaaagttttgagcatcggctgagaactttcc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 ttcagggattttttgcaaacacatggaaacaaagttttgagcatcggctgagaactttcc 2743
Query: 327 ctctggaagtttaggaggtgggccgtcgacgatggcactcaactgtgagaatatgttgtc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2742 ctctggaagtttaggaggtgggccgtcgacgatggcactcaactgtgagaatatgttgtc 2683
Query: 387 aaacgtttctggcggatacggataagctcccaatgccatttccaatatcgatagacccaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 aaacgtttctggcggatacggataagctcccaatgccatttccaatatcgatagacccaa 2623
Query: 447 agaccagatatctgattggacagaatacgttgatttgtccggattcagtgatttgattct 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 agaccagatatctgattggacagaatacgttgatttgtccggattcagtgatttgattct 2563
Query: 507 ttttggngccatgtaagattgacaaccgatatttgtcttggctaaaga-gcaacgaggtt 565
|| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 2562 ttctggggccatgtaagattgacaaccgatatttgtcttggctaaagaggcaacgaggtt 2503
Query: 566 acttgacacaccaaaatcgcatagtttaattgtaccctggcttgcagaacacaagatatt 625
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 acctgacacaccaaaatcgcatagtttaattgtaccctggcttgcagaacacaagatatt 2443
Query: 626 agtttgttttacatcacgatggatgatattatgcacgtttttcaattccttcattctttg 685
|||| |||| |||||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct: 2442 agttggtttaacatcacgatggatgatattatgcacgtctttcaattccttcaatccttg 2383
Query: 686 -attactgagcttggtatccttgctagttggggntcgtcattcccccctatttgttc-tc 743
||||||||||||| ||||||||||||||| || |||||| |||||||||||||||| ||
Sbjct: 2382 tattactgagcttgttatccttgctagttgtggttcgtcaatcccccctatttgttcatc 2323
Query: 744 atcat-agttttattttgagatccac 768
||||| |||||||| | |||||||||
Sbjct: 2322 atcataagttttatctagagatccac 2297
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6107
Number of Sequences: 1807
Number of extensions: 6107
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 909
length of database: 10,358,551
effective HSP length: 16
effective length of query: 893
effective length of database: 10,329,639
effective search space: 9224367627
effective search space used: 9224367627
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)