BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG10RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1585 541 e-154
3x_Contig1475 494 e-139
3x_Contig352 484 e-136
>3x_Contig1585
Length = 11490
Score = 541 bits (273), Expect = e-154
Identities = 287/289 (99%), Gaps = 2/289 (0%)
Strand = Plus / Minus
Query: 45 cttgtgcc-cattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattc 103
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 cttgtgccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattc 238
Query: 104 ttctaccttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 ttctaccttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgt 178
Query: 164 cagacgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaa 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 cagacgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaa 118
Query: 224 tcttcaacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 tcttcaacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgac 58
Query: 284 gatgcaaggcttcgatcatgcgtaccttagtttgtggtgcacaacgggc 332
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 57 gatgcaagg-ttcgatcatgcgtaccttagtttgtggtgcacaacgggc 10
>3x_Contig1475
Length = 10676
Score = 494 bits (249), Expect = e-139
Identities = 522/611 (85%), Gaps = 2/611 (0%)
Strand = Plus / Plus
Query: 45 cttgtgcc-cattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattc 103
|||||||| |||| ||||| |||||||||| ||||||||| ||||| ||||| |||||||
Sbjct: 8512 cttgtgccacattctctgccaaaagttgtaagacgaatttttggatattatcactcattc 8571
Query: 104 ttctaccttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgt 163
||||||||||||| ||||| || |||||||| ||||||||||| || ||||| || ||||
Sbjct: 8572 ttctaccttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgt 8631
Query: 164 cagacgcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaa 223
|||| |||||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||
Sbjct: 8632 cagatgcatccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaa 8691
Query: 224 tcttcaacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgac 283
| ||||| |||||||||||||| |||||||| |||||||||||||||||| || ||| ||
Sbjct: 8692 ttttcaatgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctac 8751
Query: 284 gatgcaaggcttcgatcatgcgtaccttagtttgtggtgcacaacgggcaataaccaagg 343
|||| || || || ||||| || ||||| || ||||| |||||||| ||||| || || |
Sbjct: 8752 gatgtaatgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaag 8811
Query: 344 gcaaaactggtagctcatcgatttccttatcactcaaagcgtcgaaatcagttgctgtca 403
||||||| ||| ||||| ||||| | |||||| ||||| |||||||||||||| | ||
Sbjct: 8812 gcaaaacacgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggcca 8871
Query: 404 taaccataaaattaacgacttcttttggataatgatataaattgtgaggtaagatgccaa 463
||||||| ||||| || ||||| ||||||||||| ||||| || ||||||||||| ||||
Sbjct: 8872 taaccatgaaatttaccacttcctttggataatggtataagttatgaggtaagataccaa 8931
Query: 464 cttcttgagctatagacttggcagtaccagggaagtcacctgtcaacatatggacgttga 523
|||||||||| || ||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct: 8932 cttcttgagcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattga 8991
Query: 524 taccagctaggtgacattttntaacagcagcaagcgattcgcgccttggtggatcgtata 583
| |||||| | ||||||||| ||||||| ||||| ||||| | ||||||||||| || |
Sbjct: 8992 ttccagcttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaa 9051
Query: 584 taccgactaatcc-caaaatgttagattattttcgacanagtcacgttccttcaatagtt 642
|||||| || || ||||||||| ||| ||||||| |||||||||||||||||||||
Sbjct: 9052 taccgatcaaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtt 9111
Query: 643 tgtccttgttg 653
| |||||||||
Sbjct: 9112 tatccttgttg 9122
>3x_Contig352
Length = 1459
Score = 484 bits (244), Expect = e-136
Identities = 371/404 (91%), Gaps = 8/404 (1%)
Strand = Plus / Plus
Query: 452 gtaagatgccaacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 511
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 gtaagatgcccacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 78
Query: 512 tatggacgttgataccagctaggtgacattttntaacagcagcaagcgattcgcgccttg 571
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 79 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 138
Query: 572 gtggatcgtatataccgactaatccc-aaaatgttagattattttcgacanagtcacgtt 630
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 139 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 198
Query: 631 ccttcaatagtttgtccttgttgatagtaaattgtgattcgttaaaggttttctttggca 690
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 199 ccttcaatagtttgtccttgttgatagtaaattgtgattcgttaaaggttttc-ttggca 257
Query: 691 aaagctaacactctnagccccttcacttgattaagtattcacattttttnttgacagttt 750
|||||||||||||| |||||| ||||||||| | |||| ||||| ||| | |||||||
Sbjct: 258 aaagctaacactcttagcccc-tcacttgataaggtatcaacattcttt-tgaacagttt 315
Query: 751 tcaggaccttctttcgttcaggggttgtggactgccattagnagttggtatacccggaat 810
|| || |||| |||| ||| ||||||||||||||||| || || ||||||||| ||| |
Sbjct: 316 cca-gatcttc-ttcggtcaagggttgtggactgccatcaggag-tggtataccaggagt 372
Query: 811 tgcaaccattgaaccactttttcaaaggcccctttggggaacac 854
||||| ||||| | |||| | ||||||||||| |||| ||||||
Sbjct: 373 tgcaa-cattgtagcactctctcaaaggcccccttggtgaacac 415
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6722
Number of Sequences: 1807
Number of extensions: 6722
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 3
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)