BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZG12RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1286 1394 0.0
>3x_Contig1286
Length = 5608
Score = 1394 bits (703), Expect = 0.0
Identities = 782/803 (97%), Gaps = 4/803 (0%)
Strand = Plus / Plus
Query: 41 gcttaaggttggggtgaagaacattgaacccgtagaagctcaattgattgaagatgatta 100
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 540 gcttaaggttggggtgaagaacattgaacccgtagaagctcaattgaatgaagatgatta 599
Query: 101 caaaactgttcagtatgtatctaagtgatctaatagcaccctaaaagataatttctttct 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 caaaactgttcagtatgtatctaagtgatctaatagcaccctaaaagataatttctttct 659
Query: 161 gttttattttaactaactaaggcttaccattattttatttatagcactttcaactaccat 220
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gttttacattaactaactaaggcttaccattattttatttatagcactttcaactaccac 719
Query: 221 ctaggccacaagagagtgaaatattgatgccttcaaatgaataaacgattcaatccgtga 280
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ctaggccacaagagagcgaaatattgatgccttcaaatgaataaacgattcaatccgtga 779
Query: 281 atatcaactcatttgggtcatcagatgtgtatagagtatgcaaagccctctcaagagatt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 atatcaactcatttgggtcatcagatgtgtatagagtatgcaaagccctctcaagagatt 839
Query: 341 taggcattagaggcttattgtcatgactttgggcgacatatcccgccttcatatcattca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 taggcattagaggcttattgtcatgactttgggcgacatatcccgccttcatatcattca 899
Query: 401 tcatagactggaaagacttgtaatgcgtaacaactctctttgcctttggttcgttcacat 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 tcatagactggaaagacttgtaatgcgtaacaactctctttgcctttggttcgttcacat 959
Query: 461 gggcaacttgttgaaggaaactgtacaacacgtcagttggagattttccactcttcacat 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960 gggcaacttgttgaaggaaactgtacaacacgtcagttggagattttccactcttcacat 1019
Query: 521 ttaaatgagaccactctttatactttactgaaacgtcgtaacgcatcttacccactaccc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 ttaaatgagaccactctttatactttactgaaacgtcgtaacgcatcttacccactaccc 1079
Query: 581 acacaagatttttcatccaatgagaaaa-tcattcaagttttctatagggaacacatcaa 639
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1080 acacaagatttttcatccaatgagaaaattcattcaagttttctatagggaacacatcaa 1139
Query: 640 cgtttgcatatattgtaacctcgtttatgattctgtctaaatttttggactttatgttta 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 cgtttgcatatattgtaacctcgtttatgattctgtctaaatttttggactttatgttta 1199
Query: 700 ggtctctcatctttgtttcttgtggagaacctcgtctcggctttgattggctttgac-tg 758
| |||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||
Sbjct: 1200 gttctctcatctttgtttcttgtgtagatcttcgtctcgtctttgattggctttgacttg 1259
Query: 759 atgcgcttactgacagtggttctaatacccgaacc-caagttggctaattctccatattg 817
|||||||| |||||||| |||||||||||||| || || |||| || |||||||||||||
Sbjct: 1260 atgcgcttcctgacagttgttctaatacccgatcctcatgttgtct-attctccatattg 1318
Query: 818 gaaaacttctttcttaaagcatt 840
| ||||||||||||||||||||
Sbjct: 1319 cataacttctttcttaaagcatt 1341
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7328
Number of Sequences: 1807
Number of extensions: 7328
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)