BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZH01FM1.SCF screened BAC_end
         (929 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig954                                                         1261   0.0  

>3x_Contig954 
          Length = 3755

 Score = 1261 bits (636), Expect = 0.0
 Identities = 740/766 (96%), Gaps = 8/766 (1%)
 Strand = Plus / Plus

                                                                       
Query: 87  cgcttaccgatgctatctctcccaaaatatacctttcgttcttgaagatcagtaattgcg 146
           ||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 95  cgcttaccgatgctatctctccctatatatacctttcgttcttgaagatcagtaattgcg 154

                                                                       
Query: 147 tacgcaaattctccataacatttccttactacctcttcaacagaatgcttttccaaaagt 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tacgcaaattctccataacatttccttactacctcttcaacagaatgcttttccaaaagt 214

                                                                       
Query: 207 gaagaaatatattccgtatcactgtgttcacaattttcaacagtatcatcattatacagt 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaagaaatatattccgtatcactgtgttcacaattttcaacagtatcatcattatacagt 274

                                                                       
Query: 267 tccccgttatactgtagaaggtaacgatcttgtaccatgacgctttgtttcgtgaatggt 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tccccgttatactgtagaaggtaacgatcttgtaccatgacgctttgtttcgtgaatggt 334

                                                                       
Query: 327 gttcttaaagataatacagatgagaacaacatagcattaatttcagataacgatctcaat 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gttcttaaagataatacagatgagaacaacatagcattaatttcagataacgatctcaat 394

                                                                       
Query: 387 gacgcatagtttggacctcttctcacgatatacggtatcagttcattaaataacgtatta 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gacgcatagtttggacctcttctcacgatatacggtatcagttcattaaataacgtatta 454

                                                                       
Query: 447 ctattacatgactgtattggtcctgttaggtctttctcgtatagttcttggaattcatca 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ctattacatgactgtattggtcctgttaggtctttctcgtatagttcttggaattcatca 514

                                                                       
Query: 507 gtaagagttgatccaaatgatttaccaaaatatgccaaaataccacacataccaaactaa 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtaagagttgatccaaatgatttaccaaaatatgccaaaataccacacataccaaactaa 574

                                                                       
Query: 567 aagcgaccaactcaagtagcttattgtactctaaattgaagtat-acaactctacatgtt 625
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| 
Sbjct: 575 aagcgaccaactcaagtagcttattgtactct-aattgaagtataacaactctacatgta 633

                                                                       
Query: 626 aagctttattaccaggagggtccacctgagatgagatatatgtatattgacaactttttt 685
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 634 aagctttattaccagaggggtccacctgagatgagatatatgtatattgacaac--tttt 691

                                                                       
Query: 686 ttttttattttttcaggctgcccaaactttagaaattaatcaaacatgtaaataangaac 745
           ||||||| |||||||||||||| || |||||||||| |||||||||||||||||| ||||
Sbjct: 692 ttttttaatttttcaggctgccaaacctttagaaataaatcaaacatgtaaataaagaac 751

                                                                       
Query: 746 cagattgactttttgatcgagaacgccctttttacgaaaagaaccttaccggattgtaaa 805
            |||||||| | ||||||||||||| || |||||||||||||||| || || || |||||
Sbjct: 752 aagattgac-tcttgatcgagaacg-ccattttacgaaaagaaccctagcgaatcgtaaa 809

                                                         
Query: 806 ttggtttcgaaccaacagcgaaacttgttttttacattcattgagg 851
            ||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 810 -tggtttcgaaccaacagcgaaac-tgttttttacattcatagagg 853


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,101
Number of Sequences: 1807
Number of extensions: 14101
Number of successful extensions: 1534
Number of sequences better than 1.0e-20: 1
length of query: 929
length of database: 10,358,551
effective HSP length: 16
effective length of query: 913
effective length of database: 10,329,639
effective search space: 9430960407
effective search space used: 9430960407
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)