BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZH01FM1.SCF screened BAC_end (929 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig954 1261 0.0 >3x_Contig954 Length = 3755 Score = 1261 bits (636), Expect = 0.0 Identities = 740/766 (96%), Gaps = 8/766 (1%) Strand = Plus / Plus Query: 87 cgcttaccgatgctatctctcccaaaatatacctttcgttcttgaagatcagtaattgcg 146 ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| Sbjct: 95 cgcttaccgatgctatctctccctatatatacctttcgttcttgaagatcagtaattgcg 154 Query: 147 tacgcaaattctccataacatttccttactacctcttcaacagaatgcttttccaaaagt 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 tacgcaaattctccataacatttccttactacctcttcaacagaatgcttttccaaaagt 214 Query: 207 gaagaaatatattccgtatcactgtgttcacaattttcaacagtatcatcattatacagt 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 gaagaaatatattccgtatcactgtgttcacaattttcaacagtatcatcattatacagt 274 Query: 267 tccccgttatactgtagaaggtaacgatcttgtaccatgacgctttgtttcgtgaatggt 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 tccccgttatactgtagaaggtaacgatcttgtaccatgacgctttgtttcgtgaatggt 334 Query: 327 gttcttaaagataatacagatgagaacaacatagcattaatttcagataacgatctcaat 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 gttcttaaagataatacagatgagaacaacatagcattaatttcagataacgatctcaat 394 Query: 387 gacgcatagtttggacctcttctcacgatatacggtatcagttcattaaataacgtatta 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 395 gacgcatagtttggacctcttctcacgatatacggtatcagttcattaaataacgtatta 454 Query: 447 ctattacatgactgtattggtcctgttaggtctttctcgtatagttcttggaattcatca 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 455 ctattacatgactgtattggtcctgttaggtctttctcgtatagttcttggaattcatca 514 Query: 507 gtaagagttgatccaaatgatttaccaaaatatgccaaaataccacacataccaaactaa 566 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 515 gtaagagttgatccaaatgatttaccaaaatatgccaaaataccacacataccaaactaa 574 Query: 567 aagcgaccaactcaagtagcttattgtactctaaattgaagtat-acaactctacatgtt 625 |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 575 aagcgaccaactcaagtagcttattgtactct-aattgaagtataacaactctacatgta 633 Query: 626 aagctttattaccaggagggtccacctgagatgagatatatgtatattgacaactttttt 685 ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| Sbjct: 634 aagctttattaccagaggggtccacctgagatgagatatatgtatattgacaac--tttt 691 Query: 686 ttttttattttttcaggctgcccaaactttagaaattaatcaaacatgtaaataangaac 745 ||||||| |||||||||||||| || |||||||||| |||||||||||||||||| |||| Sbjct: 692 ttttttaatttttcaggctgccaaacctttagaaataaatcaaacatgtaaataaagaac 751 Query: 746 cagattgactttttgatcgagaacgccctttttacgaaaagaaccttaccggattgtaaa 805 |||||||| | ||||||||||||| || |||||||||||||||| || || || ||||| Sbjct: 752 aagattgac-tcttgatcgagaacg-ccattttacgaaaagaaccctagcgaatcgtaaa 809 Query: 806 ttggtttcgaaccaacagcgaaacttgttttttacattcattgagg 851 ||||||||||||||||||||||| |||||||||||||||| |||| Sbjct: 810 -tggtttcgaaccaacagcgaaac-tgttttttacattcatagagg 853 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 14,101 Number of Sequences: 1807 Number of extensions: 14101 Number of successful extensions: 1534 Number of sequences better than 1.0e-20: 1 length of query: 929 length of database: 10,358,551 effective HSP length: 16 effective length of query: 913 effective length of database: 10,329,639 effective search space: 9430960407 effective search space used: 9430960407 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)