BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZH01RM1.SCF screened BAC_end
         (922 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig390                                                         1227   0.0  

>3x_Contig390 
          Length = 1860

 Score = 1227 bits (619), Expect = 0.0
 Identities = 749/779 (96%), Gaps = 10/779 (1%)
 Strand = Plus / Plus

                                                                        
Query: 49   cattctaaggttcttctttcattcttatggcttgatttgcttctttccatcttggcaaac 108
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477  cattctaaggttcttctttcattcttatggcttgatttgcttctttccatcttggcaaac 536

                                                                        
Query: 109  ttcgttaagttaatagtaacggataaagtagcttgtttcgtattgacttgtgacctcgag 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537  ttcgttaagttaatagtaacggataaagtagcttgtttcgtattgacttgtgacctcgag 596

                                                                        
Query: 169  gatggttcttgaggaccagcaactaatgtgataatcttattgttactcttttttcaagta 228
            |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct: 597  gatggttcttgaggaccagcaactaatgtgataatcttattgttac-cttgttccaagta 655

                                                                        
Query: 229  cgaggatccatctgcagcattcgggtgagtgttgatggaacagttgaaacttcttagctc 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  cgaggatccatctgcagcattcgggtgagtgttgatggaacagttgaaacttcttagctc 715

                                                                        
Query: 289  attccaacgacgaccatcgacacgcaatccctctggagaatatatttcaaaacgtgacat 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  attccaacgacgaccatcgacacgcaatccctctggagaatatatttcaaaacgtgacat 775

                                                                        
Query: 349  tatgttactctgttagttaaagtgggttttcctacacgctagctggaggggctaatttca 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  tatgttactctgttagttaaagtgggttttcctacacgctagctggaggggctaatttca 835

                                                                        
Query: 409  atctgacagcctctgctttgaatgtacttcttctagtagatgtcgatgagctcatatttc 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  atctgacagcctctgctttgaatgtacttcttctagtagatgtcgatgagctcatatttc 895

                                                                        
Query: 469  acttgtaagattcaaaacttgaatactttttttttttcaaattctatttcaataatcagt 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  acttgtaagattcaaaacttgaatactttttttttttcaaattctatttcaataatcagt 955

                                                                        
Query: 529  atgaagaaaacagcagcgagtgaatctgacaacggatatgaaattggatgaacggaatgg 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  atgaagaaaacagcagcgagtgaatctgacaacggatatgaaattggatgaacggaatgg 1015

                                                                        
Query: 589  aacatcaaaatactcgtcaggacttcgatcgtggctttg-aaatgtcacagtacgctaca 647
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1016 aacatcaaaatactcgtcaggacttcgatcgtggctttgaaaatgtcacagtacgctaca 1075

                                                                        
Query: 648  gtatatgcctaagttaaaataatatattccttcttatgttggaatgccttgggaatgacc 707
            ||||||| |||||||||||| ||||||| ||||||||||| || || ||| ||||||| |
Sbjct: 1076 gtatatg-ctaagttaaaattatatatt-cttcttatgtt-gattgtctt-ggaatga-c 1130

                                                                        
Query: 708  tttctggattgtatggtcag-gataaagacacccagtaaattgacttttttgaggaaaaa 766
             |||||||||  || ||||| |||||||||||| |||| || ||| ||  ||||||||||
Sbjct: 1131 gttctggatttgat-gtcagtgataaagacaccgagtagatagacgttgatgaggaaaaa 1189

                                                                       
Query: 767  cccttttttgccaaagaataagtgggggaaaaata-attttggcccttgaatttaagta 824
            | || | |||||||||||||||| ||||||||||| ||||||||| ||||||| |||||
Sbjct: 1190 cactatattgccaaagaataagttggggaaaaatacattttggcctttgaattcaagta 1248


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,236
Number of Sequences: 1807
Number of extensions: 13236
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)