BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZH01RM1.SCF screened BAC_end (922 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig390 1227 0.0 >3x_Contig390 Length = 1860 Score = 1227 bits (619), Expect = 0.0 Identities = 749/779 (96%), Gaps = 10/779 (1%) Strand = Plus / Plus Query: 49 cattctaaggttcttctttcattcttatggcttgatttgcttctttccatcttggcaaac 108 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 477 cattctaaggttcttctttcattcttatggcttgatttgcttctttccatcttggcaaac 536 Query: 109 ttcgttaagttaatagtaacggataaagtagcttgtttcgtattgacttgtgacctcgag 168 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 537 ttcgttaagttaatagtaacggataaagtagcttgtttcgtattgacttgtgacctcgag 596 Query: 169 gatggttcttgaggaccagcaactaatgtgataatcttattgttactcttttttcaagta 228 |||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| Sbjct: 597 gatggttcttgaggaccagcaactaatgtgataatcttattgttac-cttgttccaagta 655 Query: 229 cgaggatccatctgcagcattcgggtgagtgttgatggaacagttgaaacttcttagctc 288 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 656 cgaggatccatctgcagcattcgggtgagtgttgatggaacagttgaaacttcttagctc 715 Query: 289 attccaacgacgaccatcgacacgcaatccctctggagaatatatttcaaaacgtgacat 348 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 716 attccaacgacgaccatcgacacgcaatccctctggagaatatatttcaaaacgtgacat 775 Query: 349 tatgttactctgttagttaaagtgggttttcctacacgctagctggaggggctaatttca 408 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 776 tatgttactctgttagttaaagtgggttttcctacacgctagctggaggggctaatttca 835 Query: 409 atctgacagcctctgctttgaatgtacttcttctagtagatgtcgatgagctcatatttc 468 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 836 atctgacagcctctgctttgaatgtacttcttctagtagatgtcgatgagctcatatttc 895 Query: 469 acttgtaagattcaaaacttgaatactttttttttttcaaattctatttcaataatcagt 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 896 acttgtaagattcaaaacttgaatactttttttttttcaaattctatttcaataatcagt 955 Query: 529 atgaagaaaacagcagcgagtgaatctgacaacggatatgaaattggatgaacggaatgg 588 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 956 atgaagaaaacagcagcgagtgaatctgacaacggatatgaaattggatgaacggaatgg 1015 Query: 589 aacatcaaaatactcgtcaggacttcgatcgtggctttg-aaatgtcacagtacgctaca 647 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 1016 aacatcaaaatactcgtcaggacttcgatcgtggctttgaaaatgtcacagtacgctaca 1075 Query: 648 gtatatgcctaagttaaaataatatattccttcttatgttggaatgccttgggaatgacc 707 ||||||| |||||||||||| ||||||| ||||||||||| || || ||| ||||||| | Sbjct: 1076 gtatatg-ctaagttaaaattatatatt-cttcttatgtt-gattgtctt-ggaatga-c 1130 Query: 708 tttctggattgtatggtcag-gataaagacacccagtaaattgacttttttgaggaaaaa 766 ||||||||| || ||||| |||||||||||| |||| || ||| || |||||||||| Sbjct: 1131 gttctggatttgat-gtcagtgataaagacaccgagtagatagacgttgatgaggaaaaa 1189 Query: 767 cccttttttgccaaagaataagtgggggaaaaata-attttggcccttgaatttaagta 824 | || | |||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| Sbjct: 1190 cactatattgccaaagaataagttggggaaaaatacattttggcctttgaattcaagta 1248 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 13,236 Number of Sequences: 1807 Number of extensions: 13236 Number of successful extensions: 91 Number of sequences better than 1.0e-20: 1 length of query: 922 length of database: 10,358,551 effective HSP length: 16 effective length of query: 906 effective length of database: 10,329,639 effective search space: 9358652934 effective search space used: 9358652934 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)