BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH02RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 1330 0.0
>3x_Contig1758
Length = 25930
Score = 1330 bits (671), Expect = 0.0
Identities = 756/775 (97%), Gaps = 7/775 (0%)
Strand = Plus / Plus
Query: 45 gctttcgtatctaagatgtctgcttatactccaatgagctttagcaagtttgcaccttgg 104
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 19191 gctttcgtatctaagatgtctgcaaatactccaatgagctttagcaagtttgcaccttgg 19250
Query: 105 aggaaacaatctgctagtccgaaacaaaaggcagttgtcaggcgactttttgataaagtt 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19251 aggaaacaatctgctagtccgaaacaaaaggcagttgtcaggcgactttttgataaagtt 19310
Query: 165 atccgcacagaagagaaatatgcagatatggaggccaatgtagaagcatatctaataacc 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 19311 atccgcacagaagagaaatatgcagatatggaggccaatgtagaagcatatctaaaaacc 19370
Query: 225 ctagacaagggagccgcatcatctattctttttgcgacttcacttgctccaaagtatcca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19371 ctagacaagggagccgcatcatctattctttttgcgacttcacttgctccaaagtatcca 19430
Query: 285 gtgaagagaatattaaaactactatcgtggagacaagctcaaaagattcgtaacgaagac 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19431 gtgaagagaatattaaaactactatcgtggagacaagctcaaaagattcgtaacgaagac 19490
Query: 345 gtgtaaataactattaatttataatttgtatgaaaataatccccgaaaataagttgtaat 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19491 gtgtaaataactattaatttataatttgtatgaaaataatccccgaaaataagttgtaat 19550
Query: 405 actgctaaagaagctgataaccaagtcaaatcacagatcactttgctttctcttgtgcct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19551 actgctaaagaagctgataaccaagtcaaatcacagatcactttgctttctcttgtgcct 19610
Query: 465 gtatacgcaatccttctatttactatttgccgtttcatgtactgtattgatattgggaaa 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19611 gtatacgcaatccttctatttactatttgccgtttcatgtactgtattgatattgggaaa 19670
Query: 525 aagatattgcaagtaaaaatgaatcgattgatcaaaagagagaacgtgagagaataaatc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19671 aagatattgcaagtaaaaatgaatcgattgatcaaaagagagaacgtgagagaataaatc 19730
Query: 585 ccgataggcaggtatgttactcggtaagaaactcagagactaaatcattgagatggtatc 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19731 ccgataggcaggtatgttactcggtaagaaactcagagactaaatcattgagatggtatc 19790
Query: 645 tatactagccgtaccgggccca-tgaagac-tttttcgat-aatttccgttgaaaacatt 701
|||||||||||||||||| ||| ||||||| ||||||||| |||| ||||||||||||||
Sbjct: 19791 tatactagccgtaccggggccattgaagacttttttcgataaattcccgttgaaaacatt 19850
Query: 702 cgaatatgtt-atgaccaagataaagctttggactaccaaatctcgcaacggagcgcatt 760
|||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 19851 cgaatatgttaatgacgaagataaagctatggactaccaaatctcgcaacggagcgca-t 19909
Query: 761 attttg-aggttcagaaccctgtacaatcgaccaaaaaccatgttttccaattag 814
|||||| |||| ||| || |||||||||||| |||| || |||||||||||||||
Sbjct: 19910 attttgaaggtccag-acgctgtacaatcgagcaaagacgatgttttccaattag 19963
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6645
Number of Sequences: 1807
Number of extensions: 6645
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)