BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH03FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1688 1235 0.0
>3x_Contig1688
Length = 18058
Score = 1235 bits (623), Expect = 0.0
Identities = 706/729 (96%), Gaps = 5/729 (0%)
Strand = Plus / Minus
Query: 87 ctctgtatggatatcatcgccacctttcggtaaagttgagttgatcaaagggaatgctgt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11314 ctctgtatggatatcatcgccacctttcggtaaagttgagttgatcaaagggaatgctgt 11255
Query: 147 gctatcatcgaagtcatttaactcaaaatcttccacctggacagattttcttgtcgtttg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11254 gctatcatcgaagtcatttaactcaaaatcttccacctggacagattttcttgtcgtttg 11195
Query: 207 ggcataatcatcttcgcccttcattatacaaattgaacttttgtcttgatgagcttctgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11194 ggcataatcatcttcgcccttcattatacaaattgaacttttgtcttgatgagcttctgt 11135
Query: 267 agcagcctaattcttgtttcttagcagcaatctacacaacaccggccattgacttgtatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11134 agcagcctaattcttgtttcttagcagcaatctacacaacaccggccattgacttgtatc 11075
Query: 327 taccaaaatacgtatacgttcaagaatatgaatatatatatgcttcaaaaataaacgttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11074 taccaaaatacgtatacgttcaagaatatgaatatatatatgcttcaaaaataaacgttt 11015
Query: 387 aaccacacttcgggtacacatatgtttttgtcttagagctaacaatatgttagtagaact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11014 aaccacacttcgggtacacatatgtttttgtcttagagctaacaatatgttagtagaact 10955
Query: 447 ttagcaattcaacttacacttcgtaattgcagtagatactgatttctaacactcgaatga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10954 ttagcaattcaacttacacttcgtaattgcagtagatactgatttctaacactcgaatga 10895
Query: 507 ctgttataaagaacaaaccaaaccctaacaccacaggcaattactgtcagcaaagtcatc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10894 ctgttataaagaacaaaccaaaccctaacaccacaggcaattactgtcagcaaagtcatc 10835
Query: 567 aaaggccgagcgaccctgcattttagtacgaacacaanggttatttctcccatcgactaa 626
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 10834 aaaggccgagcgaccctgcattttagtacgaacacaaggg-tatttctcccatcgactaa 10776
Query: 627 ttgtccgcggaaccagacatattctgactggaataagctatgccccgtgagtatgga-cc 685
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct: 10775 ttgtccgcggaaccagacatatcctgactgcaataagctatgccccgtgagtatggagcc 10716
Query: 686 ctctggcttgcattgaga-ttaccttcaaactgcttgttctatgggtttttgaaaattcc 744
||||||| |||||||| ||||||||||||||||||||||| || ||||||||||| |
Sbjct: 10715 atctggctgtcattgagatttaccttcaaactgcttgttctagggttttttgaaaatcac 10656
Query: 745 ctttcaaaatccggttcagtttagagttttttgtactggccccgtttttccaaaactttt 804
||| |||||||||||| ||||||||||| ||||||| |||||||| ||| ||||||
Sbjct: 10655 cttcgaaaatccggttccagttagagtttttcgtactgg--ccgtttttacaagactttt 10598
Query: 805 tacctaatt 813
|||||||||
Sbjct: 10597 tacctaatt 10589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8480
Number of Sequences: 1807
Number of extensions: 8480
Number of successful extensions: 51
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)