BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH03RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1724 1261 0.0
>3x_Contig1724
Length = 20938
Score = 1261 bits (636), Expect = 0.0
Identities = 763/795 (95%), Gaps = 9/795 (1%)
Strand = Plus / Minus
Query: 49 tgccaaaattgataatgggtctgtaaacttcaagaacacgacatctcttttggaaaagaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9068 tgccaaaattgataatgggtctgtaaacttcaagaacacgacatctcttttggaaaagaa 9009
Query: 109 gtgatgcctatgtcaggcagctgatataacgaagttccgctttaatataatattccatca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9008 gtgatgcctatgtcaggcagctgatataacgaagttccgctttaatataatattccatca 8949
Query: 169 caaaatacccgaataagagtatatacaaaaaaaaagattacgtacagtaacatccagaaa 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8948 caaaatacccgaataagagtatatacaaaaaaaaagattacgtacagtaacatccagaaa 8889
Query: 229 atcagcccttgaattaagaaaaacgtcaatcctactactcatatgagtatactatccttt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8888 atcagcccttgaattaagaaaaacgtcaatcctactactcatatgagtatactatccttt 8829
Query: 289 tttagcgtgttatgcaactgactccatacctatgtatttccccgttattgtcacgtgact 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8828 tttagcgtgttatgcaactgactccatacctatgtatttccccgttattgtcacgtgact 8769
Query: 349 ctgtttaattcgaaaatttttctggctcgatacctctcaacatgaaaattgactttcgca 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8768 ctgtttaattcgaaaatttttctggctcgatacctctcaacatgaaaattgactttcgca 8709
Query: 409 ggaagcttgaatattttatcatttttgatgttcgaatatacatgctatatgaataatgat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8708 ggaagcttgaatattttatcatttttgatgttcgaatatacatgctatatgaataatgat 8649
Query: 469 taaatgagaaagtatatgtacgaagttcttaaaacttggtgtttttagttattgattttg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8648 taaatgagaaagtatatgtacgaagttcttaaaacttggtgtttttagttattgattttg 8589
Query: 529 cataataagaatcctttcttctcttcaatccacttgtttttattttcttttggattatac 588
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 8588 cataataagaatcctttcttctcttcaatccacttgtttttattttcttttgtattatac 8529
Query: 589 ttttcctcttttctctttcgtatatacacgggatatgatttcgagtcaactacggatcat 648
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 8528 ttttcctcttttctctttcgtatatacacggtatatgattcgaagtcaactacggatcat 8469
Query: 649 ttagagcataacgagaacgatgtctacttcatctgaagcagtgccaaaatcccgggggta 708
| |||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||
Sbjct: 8468 tagaagcataacgagaacgatgtctactccatctgaagcagtgccaaaat-ccggtggta 8410
Query: 709 aattggcagttacccttgaagaccccttaagggtaccaagggacggggctgaaaagggat 768
|||| |||||| ||||||||||||| |||||||||||| |||| |||||||||| ||||
Sbjct: 8409 aatt-gcagtttaccttgaagacccc-taagggtaccaa-ggactgggctgaaaa-ggat 8354
Query: 769 tggtttattagagaaggccaattttagtcaattggcggtctttgtttaagaaaaacgggg 828
| |||| |||| |||||| ||||||||||||| | ||||||||| |||| | || ||
Sbjct: 8353 atggttatcagag-aggccatttttagtcaattgtc-gtctttgttcaagagacac--gg 8298
Query: 829 gggtattacattgga 843
||||||||||||||
Sbjct: 8297 tggtattacattgga 8283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8591
Number of Sequences: 1807
Number of extensions: 8591
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)