BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH04FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1275 0.0
>3x_Contig1581
Length = 11429
Score = 1275 bits (643), Expect = 0.0
Identities = 753/781 (96%), Gaps = 7/781 (0%)
Strand = Plus / Minus
Query: 86 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 cgatgtgaaaaactcgggaaaactacagcattattatgagaatgactatgcatcgaaatt 10916
Query: 146 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10915 acttgcaaattgtggaatcaaagaatggttaaaattgaaaggttatgagtccttagcaca 10856
Query: 206 aaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctgt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10855 aaaatgaaatattagcacgcaattacgctatcagaaaagtttaaatagaatgaaacctgt 10796
Query: 266 acatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttata 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10795 acatatgatgaatgtaataaatatgatatgctaattaatttaaagatgtataaatttata 10736
Query: 326 aaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10735 aaggttgtgtatctgattatgcagcgcatgaaaacgagataggaatgtatatagtagcca 10676
Query: 386 ggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaaca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10675 ggttaaaattatgtattaatgatgtctcgatgttgaagggaaggcgtaagttttaaaaca 10616
Query: 446 agtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgctaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10615 agtttgggaatagttgtggatggcattttagaatctcttcatattgaagcccactgctaa 10556
Query: 506 tgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaattac 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10555 tgtcttggaaatcatataacatatagcagagacaaatgacgtgacaccgcaccaaattac 10496
Query: 566 atagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgntatangaac 625
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct: 10495 atagtggtcatagcccttgaaactcttttctggtccgatgatggcacctgtaataggaac 10436
Query: 626 tgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttctttccgaatt 685
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10435 tgctactaaagtaccaaatgcgacaacaaagtacattgtagaatatcttc-ttccgaatt 10377
Query: 686 cttcagtctttgagatttgtccacagcagacaggtaaggatactgaagattcttcc-gaa 744
||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||
Sbjct: 10376 cttcagtctttgagatttgtccacagcagacaggtaa-gatactgaagatacttccggaa 10318
Query: 745 ggaaattcataaatggcactggatgtcaaatacaccgttcttggtagtggcaaaa-gtta 803
| |||| |||||||||||||| ||| || |||||| || |||||||||||||| || |
Sbjct: 10317 gaaaatccataaatggcactgaatgcgaataacaccgctc-tggtagtggcaaaaggtaa 10259
Query: 804 ccccattaccaaagttattatgtcccagaaacactatcgttattatttgcaacgtttaac 863
|| ||| || |||||||||||| || |||||||||| ||| || | |||||||||| |||
Sbjct: 10258 ccacatcacaaaagttattatg-ccaagaaacactagcgtaatca-ttgcaacgttaaac 10201
Query: 864 c 864
|
Sbjct: 10200 c 10200
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6570
Number of Sequences: 1807
Number of extensions: 6570
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)