BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH04RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1172 0.0
>3x_Contig1640
Length = 15521
Score = 1172 bits (591), Expect = 0.0
Identities = 720/755 (95%), Gaps = 6/755 (0%)
Strand = Plus / Plus
Query: 49 tttcgcagagaaaagtggaaagaaacaaaaagttttatatgtaagatgatgcatattcat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4186 tttcgcagagaaaagtggaaagaaacaaaaagttttatatgtaagatgatgcatattcat 4245
Query: 109 tgtgactgatcagttaataatccgacaagggacagtaggttcgattcgtctttgggatca 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4246 tgtgactgatcagttaataatccgacaagggacagtaggttcgattcgtctttgggatca 4305
Query: 169 tattgcggttcatccttgcagagtagtacgattcacctgaaatattcaagtgctttgggt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4306 tattgcggttcatccttgcagagtagtacgattcacctgaaatattcaagtgctttgggt 4365
Query: 229 taaacacgcatagaaaagccgtttacgcttagttagtcatcttggtgtcttcagcttaag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4366 taaacacgcatagaaaagccgtttacgcttagttagtcatcttggtgtcttcagcttaag 4425
Query: 289 atgctgtccttatcccaccagaaaatgtagcatacaagacaacacaaccgaacaagtgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4426 atgctgtccttatcccaccagaaaatgtagcatacaagacaacacaaccgaacaagtgtg 4485
Query: 349 tatgatagtgttcaactacaaatgatcgtatagttgacatgattcatctcgagaatatgt 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4486 tatgatagtgttcaactacaaatgatcgtatagttgacatgattcatctcgagaatatgt 4545
Query: 409 caaaaaccctttaactacgaagtaggcggctggctaacttcttgcggcttgatttcatgt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4546 caaaaaccctttaactacgaagtaggcggctggctaacttcttgcggcttgatttcatgt 4605
Query: 469 tgttgtgcttgcgaccgcccagagcggtcttttacaagcagtgttctgtgtaatttcacg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4606 tgttgtgcttgcgaccgcccagagcggtcttttacaagcagtgttctgtgtaatttcacg 4665
Query: 529 tgacttgaatactatttcatttttttctggcaaatgggttgcatgtgactttggctgggg 588
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 4666 tgacttgaatactatttcatctttttctggcaaatgggttgcatgtgactttgtctgggt 4725
Query: 589 aatatttaaatattctatcttgaaatctttatgttcatccaaa-gtccattatgcgttat 647
||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 4726 aatatttaaatatactatcttgaaatctttatgtcgatccaaaggtccattatgcgttat 4785
Query: 648 cga-accgggaaatttccttctttgcat-tatgaggaaagcccaacagttgaagacttat 705
||| || | ||| | | |||| ||||| |||||||||||||||||||||||||||||||
Sbjct: 4786 cgatacagtgaatatccattctatgcatctatgaggaaagcccaacagttgaagacttat 4845
Query: 706 tgt-aaaccaatttttgatttttgagaaagggtttgggatttgtaacgggatctaaaggg 764
||| |||| | |||||||| || ||| |||||||||| || ||||||| ||| |||| |
Sbjct: 4846 tgtcaaacgactttttgatattggag-aagggtttggagttagtaacggaatcgaaagtg 4904
Query: 765 ggagtttaattagctaccctggttagaacctttgg 799
| |||| || ||||||| || ||||| || |||||
Sbjct: 4905 gtagttcaa-tagctacacttgttagtacttttgg 4938
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6991
Number of Sequences: 1807
Number of extensions: 6991
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)