BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC29ZH05FM1.SCF screened BAC_end
         (944 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1668                                                        1255   0.0  

>3x_Contig1668 
          Length = 13429

 Score = 1255 bits (633), Expect = 0.0
 Identities = 804/840 (95%), Gaps = 16/840 (1%)
 Strand = Plus / Minus

                                                                        
Query: 85   cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8004 cttacactagcggcgacgaaaaaatcgaggtcatcagggattcagtgccaagtgctgttg 7945

                                                                        
Query: 145  cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 204
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7944 cagctccaggttactccagcacttggtctactgccgcaagtttatctactggaggtaata 7885

                                                                        
Query: 205  tcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatcttcaggct 264
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7884 tcttcacagttaccaacaatgctaatggtactgtttcgactggtacaggatcttcaggct 7825

                                                                        
Query: 265  ccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaag 324
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7824 ccggcagttcaacctccggtaattcgggttcaacctcaaccggttcctcttcaaaaaaag 7765

                                                                        
Query: 325  aaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttctaa 384
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7764 aaggcgctgcctccagcttgccagtaccacacttggctgcgctaatttgtctacttctaa 7705

                                                                        
Query: 385  gtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagcaa 444
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7704 gtgcagtttccatcccatccttgttctgagctgaggaagactgttacttaataaaagcaa 7645

                                                                        
Query: 445  aagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaact 504
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7644 aagaaaaaaaaagaaaaatacacacaaacacacacgatgcagacttctatcagaggaact 7585

                                                                        
Query: 505  tcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgncttaattt 564
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 7584 tcgtttcacatcatctcacatttggtcttactctcttcgtctatttcattgtcttaattt 7525

                                                                        
Query: 565  agcacattttcggtttctttgtcagaacaaagattctattgccaatagaaaccctttcac 624
            ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 7524 agcacattttcgg-ttctttgtcagatcaaagattctattgccaatagaaaccctttcac 7466

                                                                        
Query: 625  tgcccaaaaattgatgcgttgctcgatcttcgttccacttgcataggaacaagaaagcct 684
            ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct: 7465 tgcccaaaaattgatgcgttgctcgatctccgttccacttgcataggaac-agaaagcct 7407

                                                                        
Query: 685  ataatcagaatttcttttaacaccctagttaatttcaatttctcacataagcttactttc 744
            |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||
Sbjct: 7406 ataatcagaatttcttttaacaccctagttaa-ttcaatttctcacataagcatactctc 7348

                                                                        
Query: 745  tatcaaaaattttgttcaaacttacccttcaaactaatttcaacaggtccaggcatttta 804
            |||||| ||| |||||| ||||||||| || |||| ||||| ||||||| | ||||||||
Sbjct: 7347 tatcaagaatattgttc-aacttaccc-tcgaact-atttcgacaggtcga-gcatttta 7292

                                                                        
Query: 805  tttttgatcaaattgatttccgattaatttngtttggagtgaacaaaaaatccaacccaa 864
             | |||||| |||||| |||||| |||||| |||| |||||||| |||||||| | ||||
Sbjct: 7291 -tattgatc-aattga-ttccga-taattt-gttt-gagtgaac-aaaaatcccaaccaa 7239

                                                                        
Query: 865  aagacggaaccctttcttaattaaactcaattccgccccttgttcagccaaattttacag 924
             |||||| || || |||||||||||||||| || ||||||||| |||||||  |||||||
Sbjct: 7238 gagacgg-acactatcttaattaaactcaa-tcagccccttgtccagccaatatttacag 7181


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8272
Number of Sequences: 1807
Number of extensions: 8272
Number of successful extensions: 134
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)