BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH06FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1138 0.0
3x_Contig57 113 7e-25
>3x_Contig1718
Length = 19496
Score = 1138 bits (574), Expect = 0.0
Identities = 728/765 (95%), Gaps = 11/765 (1%)
Strand = Plus / Plus
Query: 87 cgaccaaatgtacgatggagttctataatattgttcgaaaagacgtaatgtaacaacctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17927 cgaccaaatgtacgatggagttctataatattgttcgaaaagacgtaatgtaacaacctt 17986
Query: 147 gtactgatagaatagagaagtaccaaattcgctttgttcagaagaagtatctaacggttt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17987 gtactgatagaatagagaagtaccaaattcgctttgttcagaagaagtatctaacggttt 18046
Query: 207 cttacgtagctcagattccatccaatctagttccttttgaacagcttgatattcatcaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18047 cttacgtagctcagattccatccaatctagttccttttgaacagcttgatattcatcaga 18106
Query: 267 atttctccacacttcatggtaatcctgagttgcatgagaacctggcgcagcaccaataac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18107 atttctccacacttcatggtaatcctgagttgcatgagaacctggcgcagcaccaataac 18166
Query: 327 gtccaacatccattcagctgggttagcaccctcaggacattttgacgcaccatgtttttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18167 gtccaacatccattcagctgggttagcaccctcaggacattttgacgcaccatgtttttc 18226
Query: 387 aaagtagttaatcatttcttgacaaccttcacctaaattaccaaagtaaacagtcttacc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18227 aaagtagttaatcatttcttgacaaccttcacctaaattaccaaagtaaacagtcttacc 18286
Query: 447 acccttttgtaggaataaaagtatatcaaactcttgcatcaacaatgcggaaggttgatg 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18287 acccttttgtaggaataaaagtatatcaaactcttgcatcaacaatgcggaaggttgatg 18346
Query: 507 gattgtacacaaaatggcttgaccgtgatcagctaatttcctcattaattgacaaacgga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18347 gattgtacacaaaatggcttgaccgtgatcagctaatttcctcattaattgacaaacgga 18406
Query: 567 ccaagcagtttgagaatccaaaccagaagttggttcatccaagaataacaancattttgg 626
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 18407 ccaagcagtttgagaatccaaaccagaagttggttcatccaagaataacaacaattttgg 18466
Query: 627 ttttgctgccaattctacaccgatagtcaatcttcttttttgctcaaca-ttaaaccttt 685
||| ||||||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct: 18467 tttggctgccaattctacaccgatagtcaatctctttctttgctcaacatttaaaccttc 18526
Query: 686 acccagc-acaccaacaacgggattttgcatacttgttgcattt-tcaagata-ttaatc 742
| ||||| ||||||||||||| | | ||||||| |||||||||| ||||||| ||||||
Sbjct: 18527 a-ccagcaacaccaacaacggca-tctgcatac-tgttgcatttcccaagatatttaatc 18583
Query: 743 acgttcttcgacataattgttctttttctcaaatggattcgcttcgaaggtggacccagt 802
|||||||||||| ||||||||| ||| ||| ||| ||| |||||||| ||| ||
Sbjct: 18584 -ttctcttcgacataa-tgttcttttcctc-aattgatacgc-tcgaaggttgacgcaag 18639
Query: 803 tatgctgaaaattttcaagatttttttacagtagaagttgacaag 847
|||||||||||| | |||||| | | ||||||||||||||||||
Sbjct: 18640 tatgctgaaaatctcaaagattctctaacagtagaagttgacaag 18684
>3x_Contig57
Length = 884
Score = 113 bits (57), Expect = 7e-25
Identities = 152/184 (82%)
Strand = Plus / Plus
Query: 476 actcttgcatcaacaatgcggaaggttgatggattgtacacaaaatggcttgaccgtgat 535
|||||||||| || | ||||||||||| || || ||||||||||| ||||| ||||| |
Sbjct: 84 actcttgcattaatatagcggaaggttggtgaatagtacacaaaatagcttgtccgtggt 143
Query: 536 cagctaatttcctcattaattgacaaacggaccaagcagtttgagaatccaaaccagaag 595
|||||||||||||| || |||||||| ||||| || |||||||||||||||||||| |
Sbjct: 144 ttgctaatttcctcatcaactgacaaactgaccatgccgtttgagaatccaaaccagatg 203
Query: 596 ttggttcatccaagaataacaancattttggttttgctgccaattctacaccgatagtca 655
| ||||||||||| || || | | |||||||||| | ||||| ||||| |||||||
Sbjct: 204 taggttcatccaaaaacaatagtaactttggttttgtcactaattcaacaccaatagtca 263
Query: 656 atct 659
||||
Sbjct: 264 atct 267
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7384
Number of Sequences: 1807
Number of extensions: 7384
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)