BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH06RM1.SCF screened BAC_end
(1003 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1219 0.0
>3x_Contig1739
Length = 22061
Score = 1219 bits (615), Expect = 0.0
Identities = 647/655 (98%), Gaps = 2/655 (0%)
Strand = Plus / Plus
Query: 53 aaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctcattacctc 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10332 aaagttgcgaagctccatagaagagaagtttgtaataatcatagaatctctcattacctc 10391
Query: 113 ttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcatgtacatgg 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10392 ttgagctggatttgttctgtttcattaattcacttttctcaaatgctagcatgtacatgg 10451
Query: 173 gcaaagttttcaaagaatctggtaagattaattgccccccagaatatcctccacacagtg 232
|||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||
Sbjct: 10452 gcaaagttttcaaagaatctggtaagattaattgccccccagaagaaccgccacacagtg 10511
Query: 233 ctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaatttcattga 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10512 ctctgtattgtgtaaagatttcaatgatcttgcggtcaatgttcttcctaatttcattga 10571
Query: 293 aattacagtcttccaatgtggctagcacatctttgatcattatgctactcaccacatctt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10572 aattacagtcttccaatgtggctagcacatctttgatcattatgctactcaccacatctt 10631
Query: 353 ggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagtattaattg 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10632 ggtttataaacttgaagacttcgattacgttcgagttgacagctgcattagtattaattg 10691
Query: 413 cacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaagcatatat 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10692 cacgtactttacgtacaccatcgatatcagtatacaatagagctgcttggaagcatatat 10751
Query: 473 cttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttgatctctgg 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10752 cttctccgacctttagagtgtcatcgtacttgaatagcacgtcgaacttttgatctctgg 10811
Query: 533 tgagtacagggattacagggtcctcatcagtattctttacactctccgaataatagttgt 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10812 tgagtacagggattacagggtcctcatcagtattctttacactctccgaataatagttgt 10871
Query: 593 aaactgacagtcccgtagaacaacgcacttttagcataccttgatacccgactgtgcatt 652
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10872 aaactgacagtccggaggaacaacgcacttttagcataccttgatacccgactgtgcatt 10931
Query: 653 tcacactccctaaaatgtcattaacaaatttgaaattcatcctttattgatgttg 707
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 10932 tcacactccctaaaatgtcattaacaaatttg-aattcatcc-ttattgatgttg 10984
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8760
Number of Sequences: 1807
Number of extensions: 8760
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 1003
length of database: 10,358,551
effective HSP length: 16
effective length of query: 987
effective length of database: 10,329,639
effective search space: 10195353693
effective search space used: 10195353693
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)