BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH07FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1594 1332 0.0
>3x_Contig1594
Length = 9813
Score = 1332 bits (672), Expect = 0.0
Identities = 795/832 (95%), Gaps = 3/832 (0%)
Strand = Plus / Plus
Query: 87 gcctcaattggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaatta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5557 gcctcaattggaagcagagttcaagaacaagggcctgtcaaagaagattaaggtaaatta 5616
Query: 147 tcaactagatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5617 tcaactagatgctgaaccaagagtcgtggaaaatctagaaactgataacgtgcaaactga 5676
Query: 207 gactgtcattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5677 gactgtcattccttcagccaaggaaactattgctagtggttcgaaagctacagaagagtc 5736
Query: 267 cgctagtgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctgga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5737 cgctagtgaaccggtacaaaagaaatctgtcccggttgcatctgccaatactgacctgga 5796
Query: 327 tactgaaaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5797 tactgaaaagccaaaagttgtggaaagtgaaccaaagctcgatgaaaaggtcaaatctga 5856
Query: 387 taccagcgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5857 taccagcgctaacactgaaattattgcagaacccgctagtacgtcgaatattgcaccggc 5916
Query: 447 cgtggtcatttggatcgttataggtttcttactttggtattggttatcttaggatacatt 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5917 cgtggtcatttggatcgttataggtttcttactttggtattggttatcttaggatacatt 5976
Query: 507 ctgattaagtgagggaactatcaaccatcgtataatatatgacaacatatttctcgactt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5977 ctgattaagtgagggaactatcaaccatcgtataatatatgacaacatatttctcgactt 6036
Query: 567 tgatagaaatgttgttatgaattatattcgtatttcttttcttatctacgtctggttctt 626
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 6037 tgatagaaatgttgttatgaattatattcgtatttcttttcttatctacgtctgtttctt 6096
Query: 627 ttgttttaattacccccgtactttttaacctgtttggtctttttctttgcaggatttctt 686
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 6097 ttgttttaattacccccgtactttttaacctgtttgttc-ttttctttgcaggatttctt 6155
Query: 687 catgcggctaaaaacattcttcattattgttattggattatccttacagccattagtacc 746
||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 6156 catgcggctaaaatcattcttcattattgttattgtattatcattacagccattagtact 6215
Query: 747 ttgtttttcccttacccagacattggacaagatttttgagttagtattgaaattggttat 806
|||||| |||| || ||||||| |||||||| ||||||||||||||||||||| | ||
Sbjct: 6216 atgttttcccctagccaagacatt-gacaagatatttgagttagtattgaaattgttcat 6274
Query: 807 tttgtgacacagctggtctttttattcgtgtttcgctggaacaacttattgtaaaaacag 866
|||||||||||||| |||||| || ||||||| || ||||||| |||| ||| | ||
Sbjct: 6275 cttgtgacacagctgttcttttcatcgttgtttcgttgaaacaactcattgaaaacaaag 6334
Query: 867 ggggacgaaagaatttgaact-attcttctttaaatggaacccaatttactc 917
|| ||||||||| ||||||| ||||| ||| |||| || |||||| |||||
Sbjct: 6335 ggagacgaaagatattgaactaattctccttcaaattgatcccaatatactc 6386
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7192
Number of Sequences: 1807
Number of extensions: 7192
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)