BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH08FM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig834 1189 0.0
>3x_Contig834
Length = 2891
Score = 1189 bits (600), Expect = 0.0
Identities = 655/668 (98%), Gaps = 4/668 (0%)
Strand = Plus / Plus
Query: 87 gcacccataccataggtctttaacatctggtcgcttttcaatccatcattggagttggct 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1924 gcacccataccataggtctttaacatctggtcgcttttcaatccatcattggagttggct 1983
Query: 147 tgtcgtaccggttcatagtcttcttcttctttttgttcttcattgtcatcgctatatcca 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1984 tgtcgtaccggttcatagtcttcttcttctttttgttcttcattgtcatcgctatatcca 2043
Query: 207 tatggatcggtttttaccatactattcattgtcatactgatctttcttcttttgaactga 266
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2044 tatggatcggtaaataccatactattcattgtcatactgatctttcttcttttgaactga 2103
Query: 267 tcatcgtcactgatatgttctgacatctatactgaatcactggagtagtaatagctgact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2104 tcatcgtcactgatatgttctgacatctatactgaatcactggagtagtaatagctgact 2163
Query: 327 tggagtgactgatactcctttcaatctttactccgattaataggtatttattcatacttt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2164 tggagtgactgatactcctttcaatctttactccgattaataggtatttattcatacttt 2223
Query: 387 gaaaagatttaaaggtttgaagttcagtcttcgaagtgaaattgaccgtttaagggtttc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2224 gaaaagatttaaaggtttgaagttcagtcttcgaagtgaaattgaccgtttaagggtttc 2283
Query: 447 aaattggaaacgttgaagagatgaagatctttcggttgatctgaactgcgtctacaagaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2284 aaattggaaacgttgaagagatgaagatctttcggttgatctgaactgcgtctacaagaa 2343
Query: 507 atgagtgatgctgcaactactattcccagtgatgagatagataaattgtggaataaggcg 566
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 2344 atgagtgatgctgcaactactatacccagtgatgagatagataaattgtggaataaggcg 2403
Query: 567 agaaaccagcttgtggaagctcaagtcgaatgtgaagaatcattaaaaatcctctctaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2404 agaaaccagcttgtggaagctcaagtcgaatgtgaagaatcattaaaaatcctctctaaa 2463
Query: 627 gtgcgaactgaaatggacagctctcaaaagtccagatttaaacttaaatttatacttaat 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2464 gtgcgaactgaaatggacagctctcaaaagtccagatttaaacttaaatttatacttaat 2523
Query: 687 tggttggtgaaacaggtttgatttcttcaa-aatttcatgctccgag-aatgtattttta 744
|| |||||||| |||| |||| |||||||| ||| ||||||| |||| ||||||||| ||
Sbjct: 2524 tgtttggtgaaccagg-ttgagttcttcaagaatatcatgct-cgagaaatgtatttcta 2581
Query: 745 cagagttg 752
||||||||
Sbjct: 2582 cagagttg 2589
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8709
Number of Sequences: 1807
Number of extensions: 8709
Number of successful extensions: 142
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)