BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH08RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig586 1366 0.0
>3x_Contig586
Length = 2500
Score = 1366 bits (689), Expect = 0.0
Identities = 788/808 (97%), Gaps = 11/808 (1%)
Strand = Plus / Plus
Query: 46 caccgtaagcggacatgtccaagatttncaataaccttttcaacgtaatcaagtttttct 105
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1024 caccgtaagcggacatgtccaagattt-caataaccttttcaacgtaatcaagtttttct 1082
Query: 106 tcatctggaacagttagtggtcttctcattcttgctgagaattgtagagattctctgact 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 tcatctggaacagttagtggtcttctcattcttgctgagaattgtagagattctctgact 1142
Query: 166 gtcatttctttgatgtgaacatcttgttgttgaacgtaacccgttcttctttcgaatgag 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 gtcatttctttgatgtgaacatcttgttgttgaacgtaacccgttcttctttcgaatgag 1202
Query: 226 gcgtcgattggcttaccatttaccaacatgtcaccagtgacaacaccaatgtcagttctt 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 gcgtcgattggcttaccatttaccaacatgtcaccagtgacaacaccaatgtcagttctt 1262
Query: 286 tgagcaagtgtgtttagcaatgtagttttacctgcaccagattctcccatcaaggcagtc 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 tgagcaagtgtgtttagcaatgtagttttacctgcaccagattctcccatcaaggcagtc 1322
Query: 346 aaagtaccaggtttaacatacccagatacgttatccaataacagacgttcgccgccttta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 aaagtaccaggtttaacatacccagatacgttatccaataacagacgttcgccgccttta 1382
Query: 406 taagggatagtataacagatatccttccataggaagataccttcacttctcatatcagca 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 taagggatagtataacagatatccttccataggaagataccttcacttctcatatcagca 1442
Query: 466 aatagtgctgggtcgtccgacctagatgagctatcagtggtcttcgtaatggaatcagta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 aatagtgctgggtcgtccgacctagatgagctatcagtggtcttcgtaatggaatcagta 1502
Query: 526 ctgttaacattgctttcttcgtcttttggaatggtgttcaagctggtaccctttttgaag 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 ctgttaacattgctttcttcgtcttttggaatggtgttcaagctggtaccctttttgaag 1562
Query: 586 agtaaagcatcaccactactcttaataggggtcttgaattcagtgataacagacttgaag 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1563 agtaaagcatcaccactactcttaataggggtcttgaattcagtgataacagacttgaag 1622
Query: 646 acgaggaaaccgacc-aaaatgcgatc-aaataccg-aatttcttcattggtgtgaatat 702
||||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||||
Sbjct: 1623 acgaggaaaccgaccaaaaatgcgatcaaaataccgaaatttctccattggtgtgaatat 1682
Query: 703 gagtagtcgtacttgag-ttcaaatagttatcaccccaaacatacgattcaccctggctt 761
||||||||||||| || |||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1683 gagtagtcgtactgaagtttcaaatagttatcacccaaaacatacgattca-cctggc-t 1740
Query: 762 gagatccgatgaacgcccagaccttggattcactactgacatttctcggtaacaggaccc 821
|||||||||||||||| ||||||||| |||||||||||||| |||||| ||||||| ||
Sbjct: 1741 gagatccgatgaacgcacagaccttgtattcactactgaca-ttctcgtaaacagga-cc 1798
Query: 822 cgttggtaccttaaagtacccccgcaat 849
||||||||| ||||||||| |||||||
Sbjct: 1799 cgttggtac--taaagtaccaccgcaat 1824
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6145
Number of Sequences: 1807
Number of extensions: 6145
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)