BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH10FM1.SCF screened BAC_end
(918 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1027 1298 0.0
>3x_Contig1027
Length = 4522
Score = 1298 bits (655), Expect = 0.0
Identities = 768/795 (96%), Gaps = 8/795 (1%)
Strand = Plus / Plus
Query: 86 tgggatctgatgttgtcggtaccatcagtagcgaggacatcaaaggtatgatagatacta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1800 tgggatctgatgttgtcggtaccatcagtagcgaggacatcaaaggtatgatagatacta 1859
Query: 146 acgttgttgcccttatcaacgttacccaagctgttttgcctattttcaaagcaaagaatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1860 acgttgttgcccttatcaacgttacccaagctgttttgcctattttcaaagcaaagaatt 1919
Query: 206 ccggtgacatcgttaacttaggttctgttgccggtagagatgcatatccaactggttcta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1920 ccggtgacatcgttaacttaggttctgttgccggtagagatgcatatccaactggttcta 1979
Query: 266 tctattgtgcttcgaagcatgctgtcagagcgttcactcagtctttgagaaaagaattaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1980 tctattgtgcttcgaagcatgctgtcagagcgttcactcagtctttgagaaaagaattaa 2039
Query: 326 tcaatactggtattagggtcattgagattgctccaggtaatgtcgaaactgagttctctc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2040 tcaatactggtattagggtcattgagattgctccaggtaatgtcgaaactgagttctctc 2099
Query: 386 tagttagatacaagggtgatgccgatcgtgctaaacaggtttacaaaggtactactcctc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2100 tagttagatacaagggtgatgccgatcgtgctaaacaggtttacaaaggtactactcctc 2159
Query: 446 tatatgcagatgacattgctgacttgatcgtttatgccacttcaagaaaacctaatactg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2160 tatatgcagatgacattgctgacttgatcgtttatgccacttcaagaaaacctaatactg 2219
Query: 506 tcatcgctgatgttttggtatttgcttccaaccaagcatctccttaccacatttaccgtg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2220 tcatcgctgatgttttggtatttgcttccaaccaagcatctccttaccacatttaccgtg 2279
Query: 566 gcgaatagataatcacgtcagaagatgtgttcgtgtaacacatttttaaaaaaacttata 625
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2280 gcgaatagataatcacgtcagaagatgtgttcgtgt-acacatttttaaaaaaacttata 2338
Query: 626 caggtatacaattagtaacacatgtagcacatgttatacaacagttttgataactggata 685
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 2339 caggtatacaattagtaacacatgtagcacatgtaatacaacagttttgataactggata 2398
Query: 686 tggactcttttgctgt-aagatttagcccaaacgccagcctttttttttttggacatttt 744
|||||||||||||||| |||||| |||||||||||||||||||||| ||||| || |||
Sbjct: 2399 tggactcttttgctgtaaagattaagcccaaacgccagccttttttcttttgagca-ttt 2457
Query: 745 attaaattc-aaaaaatgctttcaacccgaagtcgaactggtggattttcacattattag 803
||||||||| ||||||||||| ||||| | |||||||||| | ||| | ||||||| |||
Sbjct: 2458 attaaattcaaaaaaatgcttccaaccag-agtcgaactgat-gatctccacattactag 2515
Query: 804 tggggcgcctttaccaacttggccctaagaacttattggttgtcctaaaaagaaaaaggg 863
|| |||||| |||||||||||||| || | |||||| |||||| ||||||||||||||
Sbjct: 2516 tgtggcgcc-ttaccaacttggccatagaagcttatt-gttgtcataaaaagaaaaagga 2573
Query: 864 gaaatttttgccctt 878
||||||| |||||||
Sbjct: 2574 gaaatttatgccctt 2588
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,795
Number of Sequences: 1807
Number of extensions: 12795
Number of successful extensions: 87
Number of sequences better than 1.0e-20: 1
length of query: 918
length of database: 10,358,551
effective HSP length: 16
effective length of query: 902
effective length of database: 10,329,639
effective search space: 9317334378
effective search space used: 9317334378
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)