BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC29ZH10RM1.SCF screened BAC_end (921 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig681 1390 0.0 >3x_Contig681 Length = 3369 Score = 1390 bits (701), Expect = 0.0 Identities = 786/805 (97%), Gaps = 7/805 (0%) Strand = Plus / Plus Query: 46 tacgggacgccaccagcaatgttctctttagcaaaagcgtcaagaggcttcaaacattat 105 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1898 tacgggacgccaccagcaatgttctctttagcaaaagcgtcaagaggcttcaaacattat 1957 Query: 106 acaagatggatggaataagaatggacggtcaccggagggttagcagatcacagttaaccc 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1958 acaagatggatggaataagaatggacggtcaccggagggttagcagatcacagttaaccc 2017 Query: 166 atatactatttaaagaaaggacagatgagtacgaccgttcaatcattgattcgaatagca 225 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2018 atatactatttaaagaaaggacagatgagtacgaccgttcaatcattgattcgaatagca 2077 Query: 226 tatatgccctc-tttaaaaaggataatgtaaatttaacaaaaaaaatggttttaattgaa 284 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2078 tatatgccctcctttaaaaaggataatgtaaatttaacaaaaaaaatggttttaattgaa 2137 Query: 285 gaaaggcggctcaatgactatcttgccgatgacagatatcagaaggaggctggatatgca 344 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2138 gaaaggcggctcaatgactatcttgccgatgacagatatcagaaggaggctggatatgca 2197 Query: 345 tgcgcattgagagtaattagaaaggttgcatccacagcatacttaagagacttcaaatct 404 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2198 tgcgcattgagagtaattagaaaggttgcatccacagcatacttaagagacttcaaatct 2257 Query: 405 acaagagaatggtatctcgctgcaagagaaaatgtgaagcgacaacgaatccagttgcta 464 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2258 acaagagaatggtatctcgctgcaagagaaaatgtgaagcgacaacgaatccagttgcta 2317 Query: 465 cctgtgtttgaacctatcgactttctaccttcattgaaattgaaacttcaagacattcat 524 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2318 cctgtgtttgaacctatcgactttctaccttcattgaaattgaaacttcaagacattcat 2377 Query: 525 aaacatagagccgccctgccgcattctgacacggctagcacgataatatcaacacaagat 584 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2378 aaacatagagccgccctgccgcattctgacacggctagcacgataatatcaacacaagat 2437 Query: 585 ctcaatgtcgatgttgaaagtgaaggatctgatcaatttgctttagattagaacaggngc 644 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 2438 ctcaatgtcgatgttgaaagtgaaggatctgatcaatttgctttagataagaacagg-gc 2496 Query: 645 tgttctacagttacttcgaaaggacgaacgtatttttgatatatggaatgcttctcatat 704 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2497 tgttctacagttactccgaaaggacgaacgtattttgaatatatggaatgcttctcatat 2556 Query: 705 tatcggtctattggccaaaccttggcgtattggtattaaacaccttcttctttatacttc 764 ||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| Sbjct: 2557 tatcggtctattggccaaacc-tggcgtattggtattaacca-cttcttctttatacttc 2614 Query: 765 atcttctggatgttattatgattcaaatgtagaaaaatgt-ttggacttggttgcttttc 823 ||| ||||||||||||||||||||||||| ||||||| || |||||||||| |||| ||| Sbjct: 2615 atc-tctggatgttattatgattcaaatg-agaaaaaagtattggacttggatgctcttc 2672 Query: 824 cggaaattttgagaaacttgccaat 848 |||| ||| ||||| ||||| |||| Sbjct: 2673 cggagattctgagagacttgacaat 2697 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7608 Number of Sequences: 1807 Number of extensions: 7608 Number of successful extensions: 46 Number of sequences better than 1.0e-20: 1 length of query: 921 length of database: 10,358,551 effective HSP length: 16 effective length of query: 905 effective length of database: 10,329,639 effective search space: 9348323295 effective search space used: 9348323295 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)