BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH11RM1.SCF screened BAC_end
(922 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1215 0.0
>3x_Contig1749
Length = 22923
Score = 1215 bits (613), Expect = 0.0
Identities = 805/856 (94%), Gaps = 10/856 (1%)
Strand = Plus / Plus
Query: 43 gcttgtcctctatgttgct-aacttcttctctttcagctgcaacagatggctctgcatta 101
||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct: 593 gcttgtcctctatgttgctcaacatcttctctttcagctgcaacagatggctctgcatta 652
Query: 102 tcagaatcactttcattatcaggggttaagtctgctaccgttgcttcgtcatcatatctt 161
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 653 tcagaatcactttcattatcaggggttaagtctgctaccgttgcttcgtcatcctatctt 712
Query: 162 actcttttctgaccagctctagtgatctctctcaactgttttctaccagatttt-tttca 220
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct: 713 actcttttctgaccagctctagtgatcactctcaactgttttctaccagattttggacca 772
Query: 221 gctctgattttactcatgtttgaggattcctttaccaaataaatgacacttttctactac 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 gctctgattttactcatgtttgaggattcctttaccaaataaatgacacttttctactac 832
Query: 281 tccagcaataaccaaatacaattaatatgatgtcaatttaatatactgctcatctcatgt 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tccagcaataaccaaatacaattaatatgatgtcaatttaatatactgctcatctcatgt 892
Query: 341 catctcatcgcatcttataatcttagatgctcaatttttcatccgtgtttaatgatctca 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 catctcatcgcatcttataatcttagatgctcaatttttcatccgtgtttaatgatctca 952
Query: 401 tcaggtccaggtacttgaaaagaagtgtcgaccccttcctaccgtaaagtcatgtcacag 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tcaggtccaggtacttgaaaagaagtgtcgaccccttcctaccgtaaagtcatgtcacag 1012
Query: 461 cagacctgaaacacctcanagattacgtctaccttgagaagcgattaaacaagttcaaag 520
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1013 cagacctgaaacacctcaaagattacgtctaccttgagaagcgattaaacaagttcaaag 1072
Query: 521 tagtgtgctcgtcatactgtttacctttttggtacgttccattccttttactactgcgcc 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1073 tagtgtgctcgtcatactgtttacctttttggtacgttccattccttttactactgcgcc 1132
Query: 581 tgttaactgactgttttcataaacttatttaatacaaac-aaaaaaattatgttacatag 639
||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||
Sbjct: 1133 tgtaaactgactgttttcataaacttatataatacaaacaaaaaaaataatgttacatag 1192
Query: 640 aattacaatggaaatcttc-agcaaaccagaagacgaaggagttcagaaaggaagcttga 698
|||||| |||||||||||| ||||||||||||||||||||||| |||||| | ||||||
Sbjct: 1193 aattacgatggaaatcttcaagcaaaccagaagacgaaggagtcaagaaagaaggcttga 1252
Query: 699 gccattcacattagcccgtcactgggcaaaatt-aacgtttccaagatgcccctattaaa 757
||||| ||| ||||||||||||| |||||||| ||||||||||||||||| ||| ||||
Sbjct: 1253 gccatcaacaatagcccgtcactgtgcaaaattcaacgtttccaagatgccactaataaa 1312
Query: 758 gaaaagttggcttcaaactctccggtattttttcacgaaaaggtttttatttcttcgggc 817
||| ||| |||||||||||| ||| ||| |||||| || || | |||||| ||| ||
Sbjct: 1313 gaagagtgtgcttcaaactctgcggatatttctcacgacaatgtatctatttc-tcgtgc 1371
Query: 818 tgattaccattcccaataagtttcc-atttggtgggcttgaaccgggggttgtcatttta 876
||||||||||| || |||||||||| | ||||||||| ||||| | || |||||| ||||
Sbjct: 1372 tgattaccatt-ccgataagtttccaagttggtgggc-tgaactgtggattgtca-ttta 1428
Query: 877 ctgtaaccctatttgc 892
||||||| |||||||
Sbjct: 1429 ctgtaacgttatttgc 1444
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7661
Number of Sequences: 1807
Number of extensions: 7661
Number of successful extensions: 145
Number of sequences better than 1.0e-20: 1
length of query: 922
length of database: 10,358,551
effective HSP length: 16
effective length of query: 906
effective length of database: 10,329,639
effective search space: 9358652934
effective search space used: 9358652934
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)