BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH12FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1473 1342 0.0
>3x_Contig1473
Length = 8041
Score = 1342 bits (677), Expect = 0.0
Identities = 710/721 (98%)
Strand = Plus / Plus
Query: 83 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4458 ctacatcataacccttgtggatcaaccaacgaggggattcaggtaagaagaataaaccaa 4517
Query: 143 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4518 caaataagatggtagaaaataccaaagaggaacctaacatatatctccaaccacctttga 4577
Query: 203 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4578 catcgaagaaaatgacaccaatgacataaccaaccaactcaccaagggcaatattgaatt 4637
Query: 263 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4638 gatacaacgaaactaaggaaccacgcacggtagatgggacagattcagcaatataaacac 4697
Query: 323 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4698 caacaccaccaccttcaataccgacaccaacaccgatcaagaatctgcctgcatacattg 4757
Query: 383 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4758 tatgaacatcctgagcagcggcacacaaaataccaccaatggtataaaaaatacatgaga 4817
Query: 443 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4818 tcactaaggcaacttttctaccgaaatattcacttaatggagttaacaagatagaaccac 4877
Query: 503 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4878 cgaccgcacccaaaggcattaaagaggaaatcaaggaatcttcatcggaagtcaatttca 4937
Query: 563 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4938 acgatgccttcataccataactggcacctgaaatggtcgattgatccacacctgacaaaa 4997
Query: 623 tacctgcaaatgatgcgaaaaaacccagcataataaccatatacgttttatttgagaagt 682
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4998 tacctgcaaatgatgcgaaaaaaccaagcataataaccatatacgttttatttgagaagt 5057
Query: 683 tcacttcacaaaattccatttttttcatacgttgtcttagcgtcttagtaactggagtat 742
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 5058 tcacttcacaaaattccattcttctcatacgttgtcttagcgtcttagtaactggagtat 5117
Query: 743 ttgcattttattcttcgtacaccttaatctggggtaaagattgatcttcactgaaaaaat 802
||||| ||| |||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct: 5118 ttgcaatttcatcttcgtacaccttaatctgtgttaagatttgatcttcactgaaaaaat 5177
Query: 803 a 803
|
Sbjct: 5178 a 5178
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6961
Number of Sequences: 1807
Number of extensions: 6961
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)