BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC29ZH12RM1.SCF screened BAC_end
(951 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1094 0.0
>3x_Contig1749
Length = 22923
Score = 1094 bits (552), Expect = 0.0
Identities = 580/587 (98%), Gaps = 2/587 (0%)
Strand = Plus / Minus
Query: 50 atgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaat-caaataag 108
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 587 atgcgttgttaactttattaaagtcagaacatccagaaaggaaacacaaatgcaaataag 528
Query: 109 aagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatggaattaat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 aagatcaagaaagattcccaacgcgctgaggaagacagtcctgaaaacgatggaattaat 468
Query: 169 attgaagatgaacaacaaaatattgaaaatgctttggatgatgttttnggtggatttgtg 228
| |||||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct: 467 agtgaagatgaacaacaaaatattgaaaatgctttggatgatgtttctggaggagttgtg 408
Query: 229 gatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatgaatccgat 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gatgaggaagatatggaagattcattatctgacgttgatgagagcgaagatgaatccgat 348
Query: 289 ccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcgataaaggc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ccattcgaatcacatttcagcaaatatagtgaatcacgcttatatgctttcgataaaggc 288
Query: 349 ttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaagaagaatct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ttcaaagacaagactgtcaaatacaaatcttcgaaaacagatgtttcggaagaagaatct 228
Query: 409 ctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggggaaacaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 ctaatatattccaaaccgtgtctagatgatgaggaagttttgcctgtgaaggggaaacaa 168
Query: 469 actttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttccaaaacaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 actttgagctcatatttcatcaaacagaagttgaaattagcaaacgatttccaaaacaat 108
Query: 529 ggcttaccgttaactgaaatt-aaaaggaacttgtagatccaatgtttcagtataaagat 587
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 107 ggcttaccgttaactgaaattcaaaaggaacttgtagatccaatgtttcagtataaagat 48
Query: 588 atgttatacgaatacgatgattatgctgatgaagatcaatacagaga 634
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 atgttatacgaatacgatgattatgctgatgaagatcaatacagaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,345
Number of Sequences: 1807
Number of extensions: 10345
Number of successful extensions: 81
Number of sequences better than 1.0e-20: 1
length of query: 951
length of database: 10,358,551
effective HSP length: 16
effective length of query: 935
effective length of database: 10,329,639
effective search space: 9658212465
effective search space used: 9658212465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)