BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA01FM1.SCF screened BAC_end
(1038 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1203 1197 0.0
>3x_Contig1203
Length = 4988
Score = 1197 bits (604), Expect = 0.0
Identities = 676/692 (97%), Gaps = 6/692 (0%)
Strand = Plus / Plus
Query: 89 aagaacttggaaaggaatccgccatcttccacttcgtcatcagctccattcaaattcctc 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1787 aagaacttggaaaggaatccgccatcttccacttcgtcatcagctccattcaaattcctc 1846
Query: 149 attccaccttttgaatgagattcagcggaatttctaccatcattagtttcttgatgtggg 208
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1847 attccaccttttgaatgagattcagcggaatttcgaccatcattagtttcttgatgtggg 1906
Query: 209 cgagcagttgatcttcttttgt-tagatgtctaaaatgatccatcttactttcagaagac 267
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct: 1907 cgagcagttgatcttctcctgaatagatgtctaaaatgatccatcttactttcagaagac 1966
Query: 268 tgggtggaaactgaatcatcctgatcctctttttcagcatccttctcctcatagtattct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1967 tgggtggaaactgaatcatcctgatcctctttttcagcatccttctcctcatagtattct 2026
Query: 328 ccaccgtcttgagttgcggtatcttcaggaatgatacttgggtgtgatttgaactgaagt 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2027 ccaccgtcttgagttgcggtatcttcaggaatgatacttgggtgtgatttgaactgaagt 2086
Query: 388 ttcttcgtaactcctgatgttcttggtgaaatatcagctggattctcaccagaatctttt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2087 ttcttcgtaactcctgatgttcttggtgaaatatcagctggattctcaccagaatctttt 2146
Query: 448 tgctcttgatgttcttcctcctcctcatcatcatcatcgaaacacctggcagctcctgaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2147 tgctcttgatgttcttcctcctcctcatcatcatcatcgaaacacctggcagctcctgaa 2206
Query: 508 ttatctctgatggtagctatcgcatcatcttcgatcatctgttgtctacgattgccagac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2207 ttatctctgatggtagctatcgcatcatcttcgatcatctgttgtctacgattgccagac 2266
Query: 568 tctgtattggatgcagttctgggtgaatatcttgcgtcagaggaaccgacgtttgtcctg 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2267 tctgtattggatgcagttctgggtgaatatcttgcgtcagaggaaccgacgtttgtcctg 2326
Query: 628 tttgccctgtttaattcatcttgtggaccctccggagggtctaaaactgggtaaattcag 687
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2327 tttgccctgtttaattcatc-tgtggaccctccggagggtctaaaactgggtaaattcag 2385
Query: 688 cctgagagctagacacgtgatttcgaacttgggtcctgcttcatccttactttgaccttg 747
||||||||||||||||| | ||||||||| |||||||||||||||| || |||| ||||
Sbjct: 2386 -ctgagagctagacacgt-aattcgaactt-ggtcctgcttcatcctcac-ttgaacttg 2441
Query: 748 agtcgccagctcttctcttagaactattcgaa 779
||||| |||||||||||| ||| |||||||||
Sbjct: 2442 agtcgtcagctcttctctcagatctattcgaa 2473
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7044
Number of Sequences: 1807
Number of extensions: 7044
Number of successful extensions: 114
Number of sequences better than 1.0e-20: 1
length of query: 1038
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1022
effective length of database: 10,329,639
effective search space: 10556891058
effective search space used: 10556891058
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)