BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC2ZA01RM1.SCF screened BAC_end
         (1024 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1699                                                        1467   0.0  

>3x_Contig1699 
          Length = 18038

 Score = 1467 bits (740), Expect = 0.0
 Identities = 869/900 (96%), Gaps = 9/900 (1%)
 Strand = Plus / Plus

                                                                        
Query: 40   aagcctgacgttttggaaaacaaagacattgtactagaagcacctttcacagaagttata 99
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4625 aagcttgacgttttggaaaacaaagacattgtactagaagcacctttcacagaagttata 4684

                                                                        
Query: 100  caaccacaaaagaccgaagaagaacttagaatccaagctgaaaaaagaagggagactggt 159
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4685 caaccacaaaagaccgaagaagaacttagaatccaagctgaaaaaagaagggagactggt 4744

                                                                        
Query: 160  aagaggttacaagaacaagccaaacaaagaaggttagaaaaacttcgtcaaaaagaggaa 219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 aagaggttacaagaacaagccaaacaaagaaggttagaaaaacttcgtcaaaaagaggaa 4804

                                                                        
Query: 220  gagtttgtgtattatgttaatatcagagaagaattgcgcgaccaaccgaagagacaaatt 279
            |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 gagtatgagtattatgttaatatcagagaagaattgcgcgaccaaccgaagagacaaatt 4864

                                                                        
Query: 280  ttaataactctacagaacgcaggatttgacgatgaacaagactttatcaactacatctca 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 ttaataactctacagaacgcaggatttgacgatgaacaagactttatcaactacatctca 4924

                                                                        
Query: 340  aaccttgaaaaggttttgaaaagaggccgtatattagacgtggaagacgacgatcaagaa 399
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4925 aaccttgaaaaggttttgaaaagaggccgtatatcagacgtggaagacgacgatcaagaa 4984

                                                                        
Query: 400  gaatctcaggagtccaaatttgatttagtggatgtcccagatgaagagctaaacgatgaa 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4985 gaatctcaggagtccaaatttgatttagtggatgtcccagatgaagagctaaacgatgaa 5044

                                                                        
Query: 460  caaaaaaaggagaaacgtaagcaaaggctattaaaggctaacattgaagcaagattaaag 519
            |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 5045 caaaaaaaggagaaacgtaagccaaggctattaacggctaacattgaagcaagattaaag 5104

                                                                        
Query: 520  gcaaaagaggaaaaagcacaattgcaaaaggcattggaagaagcgaagaaaaaggatgaa 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 5105 gcaaaagaggaaaaagcacaattgcaaaaggcattggaagaagcgaagaaaaaggatgac 5164

                                                                        
Query: 580  gattggcggaaacaagatttgaaagggtggacaagggac-aaaagattcaaactcgcgaa 638
            |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct: 5165 gattggcggaaacaagatttgacagggtggacaagggacaaaaagattcaaactcgcgaa 5224

                                                                        
Query: 639  attgatcaaaagtagaaaggacaagttgaagttgaaggaggaaatgaagggaccgt-aat 697
            ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 5225 attgatcaacagtagaaaggacaagttgaagttgaaggaggaaatgaa-ggaccgtaaat 5283

                                                                        
Query: 698  cac-aagctactcaaagaagaatgaagaatcttgcatctttggcagaagacagtgttggt 756
            ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5284 cacaaagctactcaaagaagaatgaagaatcttgcatctttggcagaggacagtgttggt 5343

                                                                        
Query: 757  cccggttaaagatctagacagggcactatagattacgatccctctgacacttttcgtgcg 816
            |||||| ||||||||||||||| |||||||||| |||||||||||||||||||  |||||
Sbjct: 5344 cccggtaaaagatctagacaggccactatagataacgatccctctgacactttcggtgcg 5403

                                                                        
Query: 817  aatgacgatgactggactatctat-atgatatagc-atcacaccaga-gctttagacgaa 873
            |||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||
Sbjct: 5404 aatgacgatgactggactatctataatgatatagcaatcacaccagaggctttagacgaa 5463

                                                                        
Query: 874  ttcttcgaagatgatacccggaagattgt-gaactagagaaatc-ttgttagaatttgat 931
            | | ||||||||||   |||| ||||||| |||||||||||||| |||||||| ||||||
Sbjct: 5464 tccatcgaagatgaataccgggagattgtggaactagagaaatctttgttagagtttgat 5523


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9314
Number of Sequences: 1807
Number of extensions: 9314
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 1024
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1008
effective length of database: 10,329,639
effective search space: 10412276112
effective search space used: 10412276112
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)