BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA02FM1.SCF screened BAC_end
(1028 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1400 0.0
>3x_Contig1744
Length = 24119
Score = 1400 bits (706), Expect = 0.0
Identities = 796/816 (97%), Gaps = 8/816 (0%)
Strand = Plus / Minus
Query: 82 tgaatgctctgaaggatttgttcttaaatggtctgttacctgaccgcaagttaaaatact 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23982 tgaatgctctgaaggatttgttcttaaatggtctgttacctgaccgcaagttaaaatact 23923
Query: 142 tcaagaaccaaaacctttccatgctactgaataagagaactttagctattttatattttg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23922 tcaagaaccaaaacctttccatgctactgaataagagaactttagctattttatattttg 23863
Query: 202 aggattacttgaagggtctatttttttagattttggaaatctttgagaaattatcccatg 261
||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 23862 aggattacttgaagggtctatatttcaagattttggaaatctttgagaaattatcccatg 23803
Query: 262 atcctatcatctatgtcagaatgcaagtgctaacacatatctttgacctgctaacagcca 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23802 atcctatcatctatgtcagaatgcaagtgctaacacatatctttgacctgctaacagcca 23743
Query: 322 aaccagaacaggaattcaacttgttgaaacttggtgttaacaaattaggtgacattgata 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23742 aaccagaacaggaattcaacttgttgaaacttggtgttaacaaattaggtgacattgata 23683
Query: 382 acaaagtagcgtcaaaggcttccttcaaacttttgaaacttgaaactcaacatccaaata 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23682 acaaagtagcgtcaaaggcttccttcaaacttttgaaacttgaaactcaacatccaaata 23623
Query: 442 tgaaatcaattgtggtagacgctgttgtcgatattgccataaggcctcaagctgactatc 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23622 tgaaatcaattgtggtagacgctgttgtcgatattgccataaggcctcaagctgactatc 23563
Query: 502 atactacatactattccgcattgacacttaatcaaacaattttgaaacgctccgagaaga 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23562 atactacatactattccgcattgacacttaatcaaacaattttgaaacgctccgagaaga 23503
Query: 562 atctagcaaatcagctaatcaagacctatttcactttattcgagaaattcttaatccaaa 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23502 atctagcaaatcagctaatcaagacctatttcactttattcgagaaattcttaatccaaa 23443
Query: 622 ctgatgctgataacgaggaatcaaagagtgaaatcaaggaatccgataagtcatatgaaa 681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23442 ctgatgctgataacgaggaatcaaagagtgaaatcaaggaatccgataagtcatatgaaa 23383
Query: 682 agaagagaaagaagaacttcangaaggggtaaaagggtggtaagtctgtcattgaagaaa 741
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct: 23382 agaagagaaagaagaacttcaagaagggtaaaaagggtggtaagtctgtcattgaagaaa 23323
Query: 742 aaagtgctcaagaagttatcgagg-aaaaaatacc-aattattcggtgctattctaactg 799
|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||
Sbjct: 23322 aaagtgctcaagaagttatcgaggaaaaaaataccaaattattcggtgctattctaactg 23263
Query: 800 gttngaatcgtgc-ttcccattctctgatatg-cggaatcc-tgtacggaatacat-ttg 855
||| ||||||||| |||||||||||||||||| ||| |||| |||||| |||||| |||
Sbjct: 23262 gtttgaatcgtgctttcccattctctgatatgccgggatccgtgtacgagatacatcttg 23203
Query: 856 at-cattgttcaaga-aacacatgcctttaatttca 889
|| |||||||||||| ||||||||| | ||||||||
Sbjct: 23202 atacattgttcaagataacacatgcgtctaatttca 23167
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8627
Number of Sequences: 1807
Number of extensions: 8627
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 1028
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1012
effective length of database: 10,329,639
effective search space: 10453594668
effective search space used: 10453594668
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)