BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA02RM1.SCF screened BAC_end
(1046 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1578 0.0
>3x_Contig1468
Length = 9852
Score = 1578 bits (796), Expect = 0.0
Identities = 927/965 (96%), Gaps = 6/965 (0%)
Strand = Plus / Minus
Query: 41 aaagccttgccgtaatcctttgacatgcaatataactttggattatctgtcaactctgga 100
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 5105 aaagctttgccgtaatcctttgacatgcaaaataactttggattatctgtcaactctgga 5046
Query: 101 tttagataaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatgg 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5045 tttagataaggttcttctaagcatggacccaaaggtgtctgtgttgtctcattggaatgg 4986
Query: 161 agagcctttcaacggatattttgacaagtacacctcgaaatttttaaactcgccagctat 220
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4985 agagcctttcaacggagattttgacaagtacacctcgaaatttttaaactcgccagctat 4926
Query: 221 cgtannctttttttattttttgaaatatagaagtcttctaatgcaatttctaagtttgag 280
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4925 cggatctcttctttattttttgaaatatagaagtcttctaatgcaatttctaagtttgag 4866
Query: 281 tgtccatactttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctct 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4865 tgtccatactttctcctatgcggccaataattcaaaatgtgatgacctcatgaaagctct 4806
Query: 341 tgtttctaacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaa 400
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4805 tgtttctaacgctatacattcagcgacaatcttttcctttttggatacgttaaacttgaa 4746
Query: 401 atctcaagctccttccactgatccctttaaagacattactattttggaaggcttggatct 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4745 atctcaagctccttccactgatccctttaaagacattactattttggaaggcttggatct 4686
Query: 461 cagcctggacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaa 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4685 cagcctggacaaagttgaaaagaattcatcgataaatggatctctttatgatttttcgaa 4626
Query: 521 cctggattccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcagg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4625 cctggattccctgattgagcttaagaaacggtctgaaacttacctctcgattacatcagg 4566
Query: 581 tcatccaatagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaa 640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4565 tcatccaatagatgcccaacagctggaagtcggctctgagaaagagatcgaaataattaa 4506
Query: 641 gaaaacatccaccgccttccttgcctatcangaattagcaacatttcaactttctggtct 700
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4505 gaaaacatccaccgccttccttgcctatcaggaattagcaacatttcaactttctggtct 4446
Query: 701 tcattcatgggttcaattggtgcagataatttgttgt-gacagtaaactttctncaattc 759
||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||
Sbjct: 4445 tcattcatgggttcaattggtgcagataatt-gttgttgacagtaaactttctccaattc 4387
Query: 760 aaagatcccaatttatattggaagtatttgaattcattattnctaaaagtaacgaatatg 819
|||||||| | |||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 4386 aaagatccaattttatattggaagtatttgaattcattattcctaaagtaaacgaatatg 4327
Query: 820 tcgaatctcgccttccatattctgaggaactagnttcccttgctgncttcc-ttatg-at 877
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct: 4326 tcgaatctcgccttccatattctgaggaactagtttcccttgctgtcttcctttatgaat 4267
Query: 878 tataccatgaggatagagttgccatcgattatgaaaaaaccttagaacgtaaggtgcatt 937
||||||||||||||||||||||||||||| ||||||||||| |||| ||| | |||| |
Sbjct: 4266 tataccatgaggatagagttgccatcgataatgaaaaaaccctagacagtaggttgca-t 4208
Query: 938 acgctttt-aagaaatgcataaactggttattgacaccatgcgcgactttaagatctgat 996
|||||||| |||| |||||||||||| ||| |||||||| |||||| |||||||||||
Sbjct: 4207 acgcttttcaagacatgcataaactgtatatcgacaccatcggcgactctaagatctgat 4148
Query: 997 tttta 1001
|||||
Sbjct: 4147 tttta 4143
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8239
Number of Sequences: 1807
Number of extensions: 8239
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 1046
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1030
effective length of database: 10,329,639
effective search space: 10639528170
effective search space used: 10639528170
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)