BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA03FM1.SCF screened BAC_end
(1037 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1625 1344 0.0
>3x_Contig1625
Length = 13618
Score = 1344 bits (678), Expect = 0.0
Identities = 847/896 (94%), Gaps = 6/896 (0%)
Strand = Plus / Plus
Query: 88 aacgggaagtagcagcaaccttttggaaggcacccttagcttgttgcttagagaccttag 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 860 aacgggaagtagcagcaaccttttggaaggcacccttagcttgttgcttagagaccttag 919
Query: 148 aaccttgagcagcagccaacttagccttttttttctttcttgcagccttgtcagccttct 207
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 920 aaccttgagcagcagccaacttagccttttcggactttcttgcagccttgtcagccttct 979
Query: 208 tcttttccttgccagtttgcttttntt-gtctctttgggcctttctaacttctggcttca 266
||||||||||| ||| | ||| | || ||||||||||||||||||||||||||||||||
Sbjct: 980 tcttttccttgtcagccttcttcttttcgtctctttgggcctttctaacttctggcttca 1039
Query: 267 aagatcttctttccttgatcaattccaaagaagcaccgacaacagctctttgagccttga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1040 aagatcttctttccttgatcaattccaaagaagcaccgacaacagctctttgagccttga 1099
Query: 327 cggactttctagttctctttctggcaacttcttcagtgatacccttcttgtggtgtcttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1100 cggactttctagttctctttctggcaacttcttcagtgatacccttcttgtggtgtcttc 1159
Query: 387 tgtacaagacagtccaagcaattcttcttgggttctttctttggtggaacaaagaagcgg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1160 tgtacaagacagtccaagcaattcttcttgggttctttctttggtggaacaaagaagcgg 1219
Query: 447 acttggaagattggaatctgaagatcttggagtcaccacggacaaacaaggtacctctac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1220 acttggaagattggaatctgaagatcttggagtcaccacggacaaacaaggtacctctac 1279
Query: 507 ctgggtaaatcttagcaccggaaaaggaatcaatttcgaccttcatttcttatctgtaat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1280 ctgggtaaatcttagcaccggaaaaggaatcaatttcgaccttcatttcttatctgtaat 1339
Query: 567 tcaaatttgcgataacgttattaacttgttagtaaatcttttgctttggaaaatatcaaa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1340 tcaaatttgcgataacgttattaacttgttagtaaatcttttgctttggaaaatatcaaa 1399
Query: 627 cggtataacaacatgacagtactggtatgcagcgttatgagtgaaagacctgtatattcc 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1400 cggtataacaacatgacagtactggtatgcagcgttatgagtgaaagacctgtatattcc 1459
Query: 687 taatcttccttctctgttcattgtattggctntacagtgtgaaaatatgtcataagttct 746
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1460 taatcttccttctctgttcattgtattggctttacagtgtgaaaatatgtcataagttct 1519
Query: 747 gatggctatcattttaaaaatttggcctaaccggcaattcatgatattagtgcgatcacg 806
||||||||||| ||||||| |||| ||||||| |||||| | |||||||||||||||
Sbjct: 1520 gatggctatca-tttaaaatattggtctaaccgcaaattcagaaaattagtgcgatcacg 1578
Query: 807 gtacatcaatcatgcccggtaatttatcccggtcataattc-atccattattcta-cata 864
||||||||||||||| || |||||||||| | |||| |||| ||||||||||||| ||||
Sbjct: 1579 gtacatcaatcatgcacgttaatttatcctgttcattattctatccattattctatcata 1638
Query: 865 ttggcaagggccttactctcaaactcaattttttaaacggtcccgcatttttatgcattc 924
||||||| ||||| ||||||||||||||| ||| ||||| ||| | ||| | || |||||
Sbjct: 1639 ttggcaatggcctcactctcaaactcaatctttcaaacgttccggtattctcatccattc 1698
Query: 925 ggttgattcatccagaaat-tttttttaacacgcgggctgtactttatttgggtca 979
||| |||||| ||||| | | || | ||||||||| ||||||| |||||| ||||
Sbjct: 1699 -gttcattcattcagaactctcttctcaacacgcggtctgtactatatttgtgtca 1753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8755
Number of Sequences: 1807
Number of extensions: 8755
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 1037
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1021
effective length of database: 10,329,639
effective search space: 10546561419
effective search space used: 10546561419
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)