BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA03RM1.SCF screened BAC_end
(1007 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1407 0.0
>3x_Contig1330
Length = 7703
Score = 1407 bits (710), Expect = 0.0
Identities = 819/841 (97%), Gaps = 11/841 (1%)
Strand = Plus / Plus
Query: 40 aagcctgactttcctgtattcggatacaattatgtaaaaaatttgctattattctttcaa 99
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4931 aagcttgactttcctgtattcggatacaaagatgtaaaaaatttgctattattctttcaa 4990
Query: 100 agtgtcagttatttaccgaattgtttcgacaaaagatcaaacttctctgttaagttctta 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4991 agtgtcagttatttaccgaattgtttcgacaaaagatcaaacttctctgttaagttctta 5050
Query: 160 ccgaaaactatatcaacaactggaaagctcctttcctccttggatgaaaaatgttcactc 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5051 ccgaaaactatatcaacaactggaaagctcctttcctccttggatgaaaaatgttcactc 5110
Query: 220 tctaattttaattctttgcacaaattttatcacactttgttggacctggtgaagttctat 279
|| || || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5111 tccaaattgaattctttgcacaaattttatcacactttgttggacctggtgaagttctat 5170
Query: 280 cagacctgtgaatcaataatcctacatggtatggttgccgatgacaatactacttcgcca 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5171 cagacctgtgaatcaataatcctacatggtatggttgccgatgacaatactacttcgcca 5230
Query: 340 taccaagacttgcttcaagcgtggaatgcacaacttagaggacaagtgaagacagcatca 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5231 taccaagacttgcttcaagcgtggaatgcacaacttagaggacaagtgaagacagcatca 5290
Query: 400 gctatttactattctatattacacaatgatttaggaaacagggaattgaagttactgtca 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5291 gctatttactattctatattacacaatgatttaggaaacagggaattgaagttactgtca 5350
Query: 460 ttattacatctatacgccatcacgttggctgaaatttcagagtgtgatacaggaaacgac 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5351 ttattacatctatacgccatcacgttggctgaaatttcagagtgtgatacaggaaacgac 5410
Query: 520 gatctgcacacattaacaaccaaggctaatcaattggtttctcaattggatcttctatta 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5411 gatctgcacacattaacaaccaaggctaatcaattggtttctcaattggatcttctatta 5470
Query: 580 aatacctcagttnttagtgctagtacagtttggcgcagtacaaaattattattggtaata 639
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5471 aatacctcagtttttagtgctagtacagtttggcgcagtacaaaattattattggtaata 5530
Query: 640 atgggaagattcgagcctttcaccaaaaacccacaagcttccaatcagaacacattactt 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5531 atgggaagattcgagcctttcaccaaaaacccacaagcttccaatcagaacacattactt 5590
Query: 700 ttaaatgagttagagcaaatatttgcaggaaatagtttattacctgcggacgattta-cc 758
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 5591 ttaaatgagttagagcaatattttgcaggaaatagtttattacctgcggacgatttaccc 5650
Query: 759 acaagt-aggcacctgtcaaaatt-aaaaatc-ttactgct-cacatatggctt-attac 813
|||||| ||||||||||||||||| ||||||| |||||||| |||||||||||| |||||
Sbjct: 5651 acaagtaaggcacctgtcaaaattaaaaaatcgttactgctccacatatggcttaattac 5710
Query: 814 -tagct-gtttcatgtctatt-atgagttagacc-aagatgtgttc-ttctagtacctgt 868
||||| ||| |||||||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct: 5711 atagctggttccatgtctattaatgagttagaccaaagatgtgttctttctagtacctgt 5770
Query: 869 t 869
|
Sbjct: 5771 t 5771
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7256
Number of Sequences: 1807
Number of extensions: 7256
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1007
length of database: 10,358,551
effective HSP length: 16
effective length of query: 991
effective length of database: 10,329,639
effective search space: 10236672249
effective search space used: 10236672249
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)