BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA04FM1.SCF screened BAC_end
(1033 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1584 1104 0.0
>3x_Contig1584
Length = 9710
Score = 1104 bits (557), Expect = 0.0
Identities = 696/723 (96%), Gaps = 15/723 (2%)
Strand = Plus / Plus
Query: 85 acccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactggatga 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3123 acccaataacccaactatatctccggctgctccaatgtccccgttgacaaaactggatga 3182
Query: 145 ttctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtattgtaaa 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3183 ttctcaggcaagaggtaatgcggactccaagtcagtaggtcctaacggtggtattgtaaa 3242
Query: 205 cagcaatgccacaagcatgtttctaatcaaatacacaagaatctcaggcctcaagtgata 264
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 3243 cagcaatgccacaagcatgtc-caaatcaaatacacaagaatctcaggcctcaagtgata 3301
Query: 265 cggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacacaaatt 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3302 cggaactgtcacgtatcggtaccattgccagtatgatagatttttctacaaacacaaatt 3361
Query: 325 tgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgaccataa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3362 tgaatctaatcgatttgaaattgtttcaccattattgcacaaacgtttggccgaccataa 3421
Query: 385 ctgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcgtttg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3422 ctgctgctggaatcagtgagaagaaaatatggtccgtcgacgtgcctgagatagcgtttg 3481
Query: 445 aatacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgtaccg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3482 aatacccatttttaatgcatgccttgttagcgtttagcgcaactcatttttctcgtaccg 3541
Query: 505 agagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattattgagag 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3542 agagtggtttggaaagatatgtaacacagcataggttggaagcacttcgattattgagag 3601
Query: 565 aagcagtactttgaaatttacgaatccaatacagatgccctagttgcaagcgccattatc 624
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 3602 aagcagtac-ttgaaattaacgaatccaatacagatgccctagttgcaagcgccattat- 3659
Query: 625 cctaat-atggattccttanctaacgcagccacgcctaccgccagtggaagtcaacagcc 683
|||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 3660 cctaataatggattccttagctaacgcagccacgcctaccgccagtgg-agtcaacagcc 3718
Query: 684 cttttgaataagtggatctattttcaaccagcgccttggatttttccacgtttaagggtg 743
| ||||||| |||||||||| ||||||| |||| |||||| ||||||||| |||| ||||
Sbjct: 3719 c-tttgaat-agtggatcta-tttcaacaagcg-cttgga-ttttccacg-ttaaaggtg 3772
Query: 744 ccagcaacaattcttacttnttggatggcccgttaactgagaagttcaaggttttattac 803
||||||||||||| || | || |||| ||| ||||||||||| |||||||||||| ||
Sbjct: 3773 -cagcaacaattctaac-tgctgtatgg-ccgctaactgagaag-tcaaggttttataac 3828
Query: 804 ctg 806
|||
Sbjct: 3829 ctg 3831
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6183
Number of Sequences: 1807
Number of extensions: 6183
Number of successful extensions: 28
Number of sequences better than 1.0e-20: 1
length of query: 1033
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1017
effective length of database: 10,329,639
effective search space: 10505242863
effective search space used: 10505242863
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)