BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC2ZA04RM1.SCF screened BAC_end
(1010 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1471 0.0
>3x_Contig1654
Length = 17174
Score = 1471 bits (742), Expect = 0.0
Identities = 848/873 (97%), Gaps = 8/873 (0%)
Strand = Plus / Minus
Query: 43 cttgaattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaa 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2770 cttgaattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaa 2711
Query: 103 gcaattttgctggccaggaccgaattttttctttctctttccttgaatataattgaatga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2710 gcaattttgctggccaggaccgaattttttctttctctttccttgaatataattgaatga 2651
Query: 163 gttttagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2650 gttttagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtc 2591
Query: 223 ccattgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2590 ccattgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttg 2531
Query: 283 ctattttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaaca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2530 ctattttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaaca 2471
Query: 343 agattgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttc 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2470 agattgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttc 2411
Query: 403 ccatgagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2410 ccatgagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatg 2351
Query: 463 ctttacagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgac 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2350 ctttacagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgac 2291
Query: 523 gtacgttaaaatcaacctganaccgat-aaatagtttaaaaacttgatacttaagtgtat 581
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 2290 gtacgttaaaatcaacctga-accgataaaatagtttaaaaacttgatacttaagtgtat 2232
Query: 582 acatatatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggat 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2231 acatatatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggat 2172
Query: 642 attattgaatcaatggtcttnctttagatgagcttcgtactgctctagcgattacaattc 701
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 2171 attattgaatcaatggtcttcctttagatgagcttcgtactgctctagcgataacaattc 2112
Query: 702 atcggattggtaatctgcctcatcgttaattttaatcttgatgatccaaccttca-cagc 760
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2111 atcggattgtaaatctgcctcatcgttaattttaatcttgatgatccaaccttcaccagc 2052
Query: 761 tgggtcgctgttgatcaattgtggccagtcagaccaagcttcgtt-accttcacgacagt 819
||||||||||||||||||||||||| |||||||| |||||||||| || | |||||||||
Sbjct: 2051 tgggtcgctgttgatcaattgtggcgagtcagacaaagcttcgttcacttccacgacagt 1992
Query: 820 a-cagcgacaggaggagt-aatttcagatgtcgacttgacggattc-acagaaccaaccg 876
| ||||||||||| |||| ||||||||||| |||||||||||||| |||||||||| ||
Sbjct: 1991 accagcgacagga-gagtaaatttcagatgcagacttgacggattcaacagaaccaaacg 1933
Query: 877 gatcgccaggctcttatttcgtatcaacttctg 909
|||||||| |||| ||| |||||||| ||||
Sbjct: 1932 aatcgccagcctctaattcggtatcaacatctg 1900
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6940
Number of Sequences: 1807
Number of extensions: 6940
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 1010
length of database: 10,358,551
effective HSP length: 16
effective length of query: 994
effective length of database: 10,329,639
effective search space: 10267661166
effective search space used: 10267661166
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)